miRNA display CGI


Results 61 - 80 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28909 3' -50.4 NC_006146.1 + 57207 0.68 0.984022
Target:  5'- cGCCGCCGUCCccGGG-CCGGag-GCCg- -3'
miRNA:   3'- -CGGUGGUAGG--UCUaGGUUaaaCGGau -5'
28909 3' -50.4 NC_006146.1 + 158131 0.68 0.984022
Target:  5'- gGCCG-CGUCCAGGUCCGGcagGUCa- -3'
miRNA:   3'- -CGGUgGUAGGUCUAGGUUaaaCGGau -5'
28909 3' -50.4 NC_006146.1 + 49144 0.68 0.984022
Target:  5'- aGCCACCAggcgcacggguUCCAGggUCAGccugUUGCCc- -3'
miRNA:   3'- -CGGUGGU-----------AGGUCuaGGUUa---AACGGau -5'
28909 3' -50.4 NC_006146.1 + 162847 0.68 0.974541
Target:  5'- uGCCAgacacccCCAgggCCGGGUCCAGcgggUGCCa- -3'
miRNA:   3'- -CGGU-------GGUa--GGUCUAGGUUaa--ACGGau -5'
28909 3' -50.4 NC_006146.1 + 155349 0.68 0.982006
Target:  5'- aGCCGgaGUCCAGAggggcCCGAgg-GCCUGa -3'
miRNA:   3'- -CGGUggUAGGUCUa----GGUUaaaCGGAU- -5'
28909 3' -50.4 NC_006146.1 + 152271 0.68 0.982006
Target:  5'- aGCCGgaGUCCAGAggggcCCGAgg-GCCUGa -3'
miRNA:   3'- -CGGUggUAGGUCUa----GGUUaaaCGGAU- -5'
28909 3' -50.4 NC_006146.1 + 149193 0.68 0.982006
Target:  5'- aGCCGgaGUCCAGAggggcCCGAgg-GCCUGa -3'
miRNA:   3'- -CGGUggUAGGUCUa----GGUUaaaCGGAU- -5'
28909 3' -50.4 NC_006146.1 + 146115 0.68 0.982006
Target:  5'- aGCCGgaGUCCAGAggggcCCGAgg-GCCUGa -3'
miRNA:   3'- -CGGUggUAGGUCUa----GGUUaaaCGGAU- -5'
28909 3' -50.4 NC_006146.1 + 111318 0.68 0.984022
Target:  5'- cGCCGCCcUCCAGAUcgCCAccugcGCCg- -3'
miRNA:   3'- -CGGUGGuAGGUCUA--GGUuaaa-CGGau -5'
28909 3' -50.4 NC_006146.1 + 60792 0.68 0.982006
Target:  5'- --aGCCGgaCCAGGUCCAGg--GCCUGg -3'
miRNA:   3'- cggUGGUa-GGUCUAGGUUaaaCGGAU- -5'
28909 3' -50.4 NC_006146.1 + 23747 0.68 0.97741
Target:  5'- cGCCGCCG-CCGGGUCaac--UGCCg- -3'
miRNA:   3'- -CGGUGGUaGGUCUAGguuaaACGGau -5'
28909 3' -50.4 NC_006146.1 + 145656 0.69 0.972003
Target:  5'- gGCCACCGggCGGggCCAGg--GCCUc -3'
miRNA:   3'- -CGGUGGUagGUCuaGGUUaaaCGGAu -5'
28909 3' -50.4 NC_006146.1 + 148733 0.69 0.972003
Target:  5'- gGCCACCGggCGGggCCAGg--GCCUc -3'
miRNA:   3'- -CGGUGGUagGUCuaGGUUaaaCGGAu -5'
28909 3' -50.4 NC_006146.1 + 102967 0.69 0.962233
Target:  5'- aGCCGcCCAUCCGGGacauacUCCAcgGUggGCCg- -3'
miRNA:   3'- -CGGU-GGUAGGUCU------AGGU--UAaaCGGau -5'
28909 3' -50.4 NC_006146.1 + 151811 0.69 0.972003
Target:  5'- gGCCACCGggCGGggCCAGg--GCCUc -3'
miRNA:   3'- -CGGUGGUagGUCuaGGUUaaaCGGAu -5'
28909 3' -50.4 NC_006146.1 + 154889 0.69 0.972003
Target:  5'- gGCCACCGggCGGggCCAGg--GCCUc -3'
miRNA:   3'- -CGGUGGUagGUCuaGGUUaaaCGGAu -5'
28909 3' -50.4 NC_006146.1 + 157967 0.69 0.972003
Target:  5'- gGCCACCGggCGGggCCAGg--GCCUc -3'
miRNA:   3'- -CGGUGGUagGUCuaGGUUaaaCGGAu -5'
28909 3' -50.4 NC_006146.1 + 142578 0.69 0.972003
Target:  5'- gGCCACCGggCGGggCCAGg--GCCUc -3'
miRNA:   3'- -CGGUGGUagGUCuaGGUUaaaCGGAu -5'
28909 3' -50.4 NC_006146.1 + 156710 0.7 0.950315
Target:  5'- cGCCuccCCGUCCAGGcUCCGGggguccaGCCUGg -3'
miRNA:   3'- -CGGu--GGUAGGUCU-AGGUUaaa----CGGAU- -5'
28909 3' -50.4 NC_006146.1 + 131106 0.7 0.941109
Target:  5'- gGCCGCCGUcCCAGAagccgggagcUCCGGgcccaaGCCUGa -3'
miRNA:   3'- -CGGUGGUA-GGUCU----------AGGUUaaa---CGGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.