Results 81 - 89 of 89 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28909 | 3' | -50.4 | NC_006146.1 | + | 49245 | 0.7 | 0.936118 |
Target: 5'- -gCACC-UCCGGGUCCAGg--GCCg- -3' miRNA: 3'- cgGUGGuAGGUCUAGGUUaaaCGGau -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 98548 | 0.7 | 0.936118 |
Target: 5'- cGCCGCCAgCCGG-UCCAGg--GCCc- -3' miRNA: 3'- -CGGUGGUaGGUCuAGGUUaaaCGGau -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 50311 | 0.71 | 0.924787 |
Target: 5'- cGCCGCCgggccuuGUCCAGGUCaaacUUGCCa- -3' miRNA: 3'- -CGGUGG-------UAGGUCUAGguuaAACGGau -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 116878 | 0.71 | 0.913538 |
Target: 5'- gGCCGCCcUCCGGAggcgCCAccuggUGCCg- -3' miRNA: 3'- -CGGUGGuAGGUCUa---GGUuaa--ACGGau -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 95849 | 0.72 | 0.88681 |
Target: 5'- gGCCugCAUCCAGAagCGAUg-GCCg- -3' miRNA: 3'- -CGGugGUAGGUCUagGUUAaaCGGau -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 125736 | 0.72 | 0.893873 |
Target: 5'- cGCCGCCG-CC-GAUCCGAg--GCCUc -3' miRNA: 3'- -CGGUGGUaGGuCUAGGUUaaaCGGAu -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 126115 | 0.8 | 0.492926 |
Target: 5'- -aCACCAUCCAGAUCCccg--GCCUGg -3' miRNA: 3'- cgGUGGUAGGUCUAGGuuaaaCGGAU- -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 113592 | 0.81 | 0.453584 |
Target: 5'- aGCCACgCGUCCAGGUCCAcaaagGCCUc -3' miRNA: 3'- -CGGUG-GUAGGUCUAGGUuaaa-CGGAu -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 17535 | 1.09 | 0.009053 |
Target: 5'- gGCCACCAUCCAGAUCCAAUUUGCCUAu -3' miRNA: 3'- -CGGUGGUAGGUCUAGGUUAAACGGAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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