miRNA display CGI


Results 41 - 60 of 89 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28909 3' -50.4 NC_006146.1 + 135613 0.67 0.989051
Target:  5'- gGCCGCUG-CCGGGUCCGc--UGCCc- -3'
miRNA:   3'- -CGGUGGUaGGUCUAGGUuaaACGGau -5'
28909 3' -50.4 NC_006146.1 + 139212 0.67 0.986885
Target:  5'- aGCCGCgGUCCcccacccuucccuGGUCCcugggcuGUUUGCCUGa -3'
miRNA:   3'- -CGGUGgUAGGu------------CUAGGu------UAAACGGAU- -5'
28909 3' -50.4 NC_006146.1 + 135984 0.67 0.989051
Target:  5'- gGCCGCUG-CCGGGUCCGc--UGCCc- -3'
miRNA:   3'- -CGGUGGUaGGUCUAGGUuaaACGGau -5'
28909 3' -50.4 NC_006146.1 + 135798 0.67 0.989051
Target:  5'- gGCCGCUG-CCGGGUCCGc--UGCCc- -3'
miRNA:   3'- -CGGUGGUaGGUCUAGGUuaaACGGau -5'
28909 3' -50.4 NC_006146.1 + 136263 0.67 0.989051
Target:  5'- gGCCGCUG-CCGGGUCCGc--UGCCc- -3'
miRNA:   3'- -CGGUGGUaGGUCUAGGUuaaACGGau -5'
28909 3' -50.4 NC_006146.1 + 135891 0.67 0.989051
Target:  5'- gGCCGCUG-CCGGGUCCGc--UGCCc- -3'
miRNA:   3'- -CGGUGGUaGGUCUAGGUuaaACGGau -5'
28909 3' -50.4 NC_006146.1 + 136170 0.67 0.989051
Target:  5'- gGCCGCUG-CCGGGUCCGc--UGCCc- -3'
miRNA:   3'- -CGGUGGUaGGUCUAGGUuaaACGGau -5'
28909 3' -50.4 NC_006146.1 + 136356 0.67 0.989051
Target:  5'- gGCCGCUG-CCGGGUCCGc--UGCCc- -3'
miRNA:   3'- -CGGUGGUaGGUCUAGGUuaaACGGau -5'
28909 3' -50.4 NC_006146.1 + 136077 0.67 0.989051
Target:  5'- gGCCGCUG-CCGGGUCCGc--UGCCc- -3'
miRNA:   3'- -CGGUGGUaGGUCUAGGUuaaACGGau -5'
28909 3' -50.4 NC_006146.1 + 116231 0.67 0.99165
Target:  5'- cGCCACCGUCUgggAGGUCUAcgacgggGCCc- -3'
miRNA:   3'- -CGGUGGUAGG---UCUAGGUuaaa---CGGau -5'
28909 3' -50.4 NC_006146.1 + 95975 0.67 0.99165
Target:  5'- gGCC-CagguUCCAGAUCCuguacUGCCUGg -3'
miRNA:   3'- -CGGuGgu--AGGUCUAGGuuaa-ACGGAU- -5'
28909 3' -50.4 NC_006146.1 + 40955 0.67 0.99165
Target:  5'- cCCACC--CCAGGUCCG---UGCCg- -3'
miRNA:   3'- cGGUGGuaGGUCUAGGUuaaACGGau -5'
28909 3' -50.4 NC_006146.1 + 61996 0.67 0.985862
Target:  5'- uGUCACaUAUCCAGAUCUGAg-UGCCc- -3'
miRNA:   3'- -CGGUG-GUAGGUCUAGGUUaaACGGau -5'
28909 3' -50.4 NC_006146.1 + 43762 0.67 0.987213
Target:  5'- -aCGCCGUCCAGcUCCAcgcggagcaGCCUAu -3'
miRNA:   3'- cgGUGGUAGGUCuAGGUuaaa-----CGGAU- -5'
28909 3' -50.4 NC_006146.1 + 13227 0.67 0.989051
Target:  5'- gGCCugCggCCAGAcCCAGUUcuacaucaGCCUGg -3'
miRNA:   3'- -CGGugGuaGGUCUaGGUUAAa-------CGGAU- -5'
28909 3' -50.4 NC_006146.1 + 129461 0.67 0.989051
Target:  5'- gGCCAgCC--CCAGAUCUAGga-GCCUAg -3'
miRNA:   3'- -CGGU-GGuaGGUCUAGGUUaaaCGGAU- -5'
28909 3' -50.4 NC_006146.1 + 25159 0.67 0.989051
Target:  5'- uCUACC-UCCAGAUCCugcccgGCCa- -3'
miRNA:   3'- cGGUGGuAGGUCUAGGuuaaa-CGGau -5'
28909 3' -50.4 NC_006146.1 + 81054 0.67 0.989051
Target:  5'- gGCCACCAaaUUC---UCCAGUUUcGCCUAg -3'
miRNA:   3'- -CGGUGGU--AGGucuAGGUUAAA-CGGAU- -5'
28909 3' -50.4 NC_006146.1 + 8888 0.67 0.99165
Target:  5'- uCCACCGUggagCCGGucucCCAGggUGCCUAu -3'
miRNA:   3'- cGGUGGUA----GGUCua--GGUUaaACGGAU- -5'
28909 3' -50.4 NC_006146.1 + 135706 0.67 0.989051
Target:  5'- gGCCGCUG-CCGGGUCCGc--UGCCc- -3'
miRNA:   3'- -CGGUGGUaGGUCUAGGUuaaACGGau -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.