miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28909 3' -50.4 NC_006146.1 + 17535 1.09 0.009053
Target:  5'- gGCCACCAUCCAGAUCCAAUUUGCCUAu -3'
miRNA:   3'- -CGGUGGUAGGUCUAGGUUAAACGGAU- -5'
28909 3' -50.4 NC_006146.1 + 113592 0.81 0.453584
Target:  5'- aGCCACgCGUCCAGGUCCAcaaagGCCUc -3'
miRNA:   3'- -CGGUG-GUAGGUCUAGGUuaaa-CGGAu -5'
28909 3' -50.4 NC_006146.1 + 126115 0.8 0.492926
Target:  5'- -aCACCAUCCAGAUCCccg--GCCUGg -3'
miRNA:   3'- cgGUGGUAGGUCUAGGuuaaaCGGAU- -5'
28909 3' -50.4 NC_006146.1 + 95849 0.72 0.88681
Target:  5'- gGCCugCAUCCAGAagCGAUg-GCCg- -3'
miRNA:   3'- -CGGugGUAGGUCUagGUUAaaCGGau -5'
28909 3' -50.4 NC_006146.1 + 125736 0.72 0.893873
Target:  5'- cGCCGCCG-CC-GAUCCGAg--GCCUc -3'
miRNA:   3'- -CGGUGGUaGGuCUAGGUUaaaCGGAu -5'
28909 3' -50.4 NC_006146.1 + 116878 0.71 0.913538
Target:  5'- gGCCGCCcUCCGGAggcgCCAccuggUGCCg- -3'
miRNA:   3'- -CGGUGGuAGGUCUa---GGUuaa--ACGGau -5'
28909 3' -50.4 NC_006146.1 + 50311 0.71 0.924787
Target:  5'- cGCCGCCgggccuuGUCCAGGUCaaacUUGCCa- -3'
miRNA:   3'- -CGGUGG-------UAGGUCUAGguuaAACGGau -5'
28909 3' -50.4 NC_006146.1 + 49245 0.7 0.936118
Target:  5'- -gCACC-UCCGGGUCCAGg--GCCg- -3'
miRNA:   3'- cgGUGGuAGGUCUAGGUUaaaCGGau -5'
28909 3' -50.4 NC_006146.1 + 98548 0.7 0.936118
Target:  5'- cGCCGCCAgCCGG-UCCAGg--GCCc- -3'
miRNA:   3'- -CGGUGGUaGGUCuAGGUUaaaCGGau -5'
28909 3' -50.4 NC_006146.1 + 131106 0.7 0.941109
Target:  5'- gGCCGCCGUcCCAGAagccgggagcUCCGGgcccaaGCCUGa -3'
miRNA:   3'- -CGGUGGUA-GGUCU----------AGGUUaaa---CGGAU- -5'
28909 3' -50.4 NC_006146.1 + 156710 0.7 0.950315
Target:  5'- cGCCuccCCGUCCAGGcUCCGGggguccaGCCUGg -3'
miRNA:   3'- -CGGu--GGUAGGUCU-AGGUUaaa----CGGAU- -5'
28909 3' -50.4 NC_006146.1 + 102967 0.69 0.962233
Target:  5'- aGCCGcCCAUCCGGGacauacUCCAcgGUggGCCg- -3'
miRNA:   3'- -CGGU-GGUAGGUCU------AGGU--UAaaCGGau -5'
28909 3' -50.4 NC_006146.1 + 151811 0.69 0.972003
Target:  5'- gGCCACCGggCGGggCCAGg--GCCUc -3'
miRNA:   3'- -CGGUGGUagGUCuaGGUUaaaCGGAu -5'
28909 3' -50.4 NC_006146.1 + 157967 0.69 0.972003
Target:  5'- gGCCACCGggCGGggCCAGg--GCCUc -3'
miRNA:   3'- -CGGUGGUagGUCuaGGUUaaaCGGAu -5'
28909 3' -50.4 NC_006146.1 + 142578 0.69 0.972003
Target:  5'- gGCCACCGggCGGggCCAGg--GCCUc -3'
miRNA:   3'- -CGGUGGUagGUCuaGGUUaaaCGGAu -5'
28909 3' -50.4 NC_006146.1 + 145656 0.69 0.972003
Target:  5'- gGCCACCGggCGGggCCAGg--GCCUc -3'
miRNA:   3'- -CGGUGGUagGUCuaGGUUaaaCGGAu -5'
28909 3' -50.4 NC_006146.1 + 148733 0.69 0.972003
Target:  5'- gGCCACCGggCGGggCCAGg--GCCUc -3'
miRNA:   3'- -CGGUGGUagGUCuaGGUUaaaCGGAu -5'
28909 3' -50.4 NC_006146.1 + 154889 0.69 0.972003
Target:  5'- gGCCACCGggCGGggCCAGg--GCCUc -3'
miRNA:   3'- -CGGUGGUagGUCuaGGUUaaaCGGAu -5'
28909 3' -50.4 NC_006146.1 + 162847 0.68 0.974541
Target:  5'- uGCCAgacacccCCAgggCCGGGUCCAGcgggUGCCa- -3'
miRNA:   3'- -CGGU-------GGUa--GGUCUAGGUUaa--ACGGau -5'
28909 3' -50.4 NC_006146.1 + 23747 0.68 0.97741
Target:  5'- cGCCGCCG-CCGGGUCaac--UGCCg- -3'
miRNA:   3'- -CGGUGGUaGGUCUAGguuaaACGGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.