miRNA display CGI


Results 61 - 80 of 89 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28909 3' -50.4 NC_006146.1 + 135427 0.67 0.989051
Target:  5'- gGCCGCUG-CCGGGUCCGc--UGCCc- -3'
miRNA:   3'- -CGGUGGUaGGUCUAGGUuaaACGGau -5'
28909 3' -50.4 NC_006146.1 + 25159 0.67 0.989051
Target:  5'- uCUACC-UCCAGAUCCugcccgGCCa- -3'
miRNA:   3'- cGGUGGuAGGUCUAGGuuaaa-CGGau -5'
28909 3' -50.4 NC_006146.1 + 129461 0.67 0.989051
Target:  5'- gGCCAgCC--CCAGAUCUAGga-GCCUAg -3'
miRNA:   3'- -CGGU-GGuaGGUCUAGGUUaaaCGGAU- -5'
28909 3' -50.4 NC_006146.1 + 13227 0.67 0.989051
Target:  5'- gGCCugCggCCAGAcCCAGUUcuacaucaGCCUGg -3'
miRNA:   3'- -CGGugGuaGGUCUaGGUUAAa-------CGGAU- -5'
28909 3' -50.4 NC_006146.1 + 81054 0.67 0.989051
Target:  5'- gGCCACCAaaUUC---UCCAGUUUcGCCUAg -3'
miRNA:   3'- -CGGUGGU--AGGucuAGGUUAAA-CGGAU- -5'
28909 3' -50.4 NC_006146.1 + 137564 0.67 0.989051
Target:  5'- gGCCGCUG-CCGGGUCCGc--UGCCc- -3'
miRNA:   3'- -CGGUGGUaGGUCUAGGUuaaACGGau -5'
28909 3' -50.4 NC_006146.1 + 135148 0.67 0.989051
Target:  5'- gGCCGCUG-CCGGGUCCGc--UGCCc- -3'
miRNA:   3'- -CGGUGGUaGGUCUAGGUuaaACGGau -5'
28909 3' -50.4 NC_006146.1 + 135241 0.67 0.989051
Target:  5'- gGCCGCUG-CCGGGUCCGc--UGCCc- -3'
miRNA:   3'- -CGGUGGUaGGUCUAGGUuaaACGGau -5'
28909 3' -50.4 NC_006146.1 + 135334 0.67 0.989051
Target:  5'- gGCCGCUG-CCGGGUCCGc--UGCCc- -3'
miRNA:   3'- -CGGUGGUaGGUCUAGGUuaaACGGau -5'
28909 3' -50.4 NC_006146.1 + 52851 0.67 0.989615
Target:  5'- cGCCGCCGcccccgcccgggggcUCCAGGUCCGug--GuCCUc -3'
miRNA:   3'- -CGGUGGU---------------AGGUCUAGGUuaaaC-GGAu -5'
28909 3' -50.4 NC_006146.1 + 33240 0.67 0.990419
Target:  5'- gGCCGCCGg-CGGGUCCGccggGCCg- -3'
miRNA:   3'- -CGGUGGUagGUCUAGGUuaaaCGGau -5'
28909 3' -50.4 NC_006146.1 + 95975 0.67 0.99165
Target:  5'- gGCC-CagguUCCAGAUCCuguacUGCCUGg -3'
miRNA:   3'- -CGGuGgu--AGGUCUAGGuuaa-ACGGAU- -5'
28909 3' -50.4 NC_006146.1 + 3080 0.67 0.99165
Target:  5'- gGCUACCGUCCAGAccgcucuggagcUCUucuccgGCCUc -3'
miRNA:   3'- -CGGUGGUAGGUCU------------AGGuuaaa-CGGAu -5'
28909 3' -50.4 NC_006146.1 + 8888 0.67 0.99165
Target:  5'- uCCACCGUggagCCGGucucCCAGggUGCCUAu -3'
miRNA:   3'- cGGUGGUA----GGUCua--GGUUaaACGGAU- -5'
28909 3' -50.4 NC_006146.1 + 116231 0.67 0.99165
Target:  5'- cGCCACCGUCUgggAGGUCUAcgacgggGCCc- -3'
miRNA:   3'- -CGGUGGUAGG---UCUAGGUuaaa---CGGau -5'
28909 3' -50.4 NC_006146.1 + 40955 0.67 0.99165
Target:  5'- cCCACC--CCAGGUCCG---UGCCg- -3'
miRNA:   3'- cGGUGGuaGGUCUAGGUuaaACGGau -5'
28909 3' -50.4 NC_006146.1 + 13988 0.66 0.992751
Target:  5'- cGCCGCCAcCCAGG-CCucg--GCCg- -3'
miRNA:   3'- -CGGUGGUaGGUCUaGGuuaaaCGGau -5'
28909 3' -50.4 NC_006146.1 + 54822 0.66 0.992751
Target:  5'- cGCCACCAUgcaCCAGGacgucgCCAcAUUUGUCa- -3'
miRNA:   3'- -CGGUGGUA---GGUCUa-----GGU-UAAACGGau -5'
28909 3' -50.4 NC_006146.1 + 123311 0.66 0.992751
Target:  5'- gGCCGCCGagUGGAUCCGGgacGUCUGc -3'
miRNA:   3'- -CGGUGGUagGUCUAGGUUaaaCGGAU- -5'
28909 3' -50.4 NC_006146.1 + 105176 0.66 0.992751
Target:  5'- gGCCgcACCGUCCAGugaCCGGg--GCCg- -3'
miRNA:   3'- -CGG--UGGUAGGUCua-GGUUaaaCGGau -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.