Results 21 - 40 of 89 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28909 | 3' | -50.4 | NC_006146.1 | + | 135148 | 0.67 | 0.989051 |
Target: 5'- gGCCGCUG-CCGGGUCCGc--UGCCc- -3' miRNA: 3'- -CGGUGGUaGGUCUAGGUuaaACGGau -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 136542 | 0.67 | 0.989051 |
Target: 5'- gGCCGCUG-CCGGGUCCGc--UGCCc- -3' miRNA: 3'- -CGGUGGUaGGUCUAGGUuaaACGGau -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 136727 | 0.67 | 0.989051 |
Target: 5'- gGCCGCUG-CCGGGUCCGc--UGCCc- -3' miRNA: 3'- -CGGUGGUaGGUCUAGGUuaaACGGau -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 136449 | 0.67 | 0.989051 |
Target: 5'- gGCCGCUG-CCGGGUCCGc--UGCCc- -3' miRNA: 3'- -CGGUGGUaGGUCUAGGUuaaACGGau -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 135334 | 0.67 | 0.989051 |
Target: 5'- gGCCGCUG-CCGGGUCCGc--UGCCc- -3' miRNA: 3'- -CGGUGGUaGGUCUAGGUuaaACGGau -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 137006 | 0.67 | 0.989051 |
Target: 5'- gGCCGCUG-CCGGGUCCGc--UGCCc- -3' miRNA: 3'- -CGGUGGUaGGUCUAGGUuaaACGGau -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 135613 | 0.67 | 0.989051 |
Target: 5'- gGCCGCUG-CCGGGUCCGc--UGCCc- -3' miRNA: 3'- -CGGUGGUaGGUCUAGGUuaaACGGau -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 135520 | 0.67 | 0.989051 |
Target: 5'- gGCCGCUG-CCGGGUCCGc--UGCCc- -3' miRNA: 3'- -CGGUGGUaGGUCUAGGUuaaACGGau -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 136077 | 0.67 | 0.989051 |
Target: 5'- gGCCGCUG-CCGGGUCCGc--UGCCc- -3' miRNA: 3'- -CGGUGGUaGGUCUAGGUuaaACGGau -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 135891 | 0.67 | 0.989051 |
Target: 5'- gGCCGCUG-CCGGGUCCGc--UGCCc- -3' miRNA: 3'- -CGGUGGUaGGUCUAGGUuaaACGGau -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 129461 | 0.67 | 0.989051 |
Target: 5'- gGCCAgCC--CCAGAUCUAGga-GCCUAg -3' miRNA: 3'- -CGGU-GGuaGGUCUAGGUUaaaCGGAU- -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 13227 | 0.67 | 0.989051 |
Target: 5'- gGCCugCggCCAGAcCCAGUUcuacaucaGCCUGg -3' miRNA: 3'- -CGGugGuaGGUCUaGGUUAAa-------CGGAU- -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 136913 | 0.67 | 0.989051 |
Target: 5'- gGCCGCUG-CCGGGUCCGc--UGCCc- -3' miRNA: 3'- -CGGUGGUaGGUCUAGGUuaaACGGau -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 136356 | 0.67 | 0.989051 |
Target: 5'- gGCCGCUG-CCGGGUCCGc--UGCCc- -3' miRNA: 3'- -CGGUGGUaGGUCUAGGUuaaACGGau -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 136635 | 0.67 | 0.989051 |
Target: 5'- gGCCGCUG-CCGGGUCCGc--UGCCc- -3' miRNA: 3'- -CGGUGGUaGGUCUAGGUuaaACGGau -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 136820 | 0.67 | 0.989051 |
Target: 5'- gGCCGCUG-CCGGGUCCGc--UGCCc- -3' miRNA: 3'- -CGGUGGUaGGUCUAGGUuaaACGGau -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 135984 | 0.67 | 0.989051 |
Target: 5'- gGCCGCUG-CCGGGUCCGc--UGCCc- -3' miRNA: 3'- -CGGUGGUaGGUCUAGGUuaaACGGau -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 136170 | 0.67 | 0.989051 |
Target: 5'- gGCCGCUG-CCGGGUCCGc--UGCCc- -3' miRNA: 3'- -CGGUGGUaGGUCUAGGUuaaACGGau -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 135706 | 0.67 | 0.989051 |
Target: 5'- gGCCGCUG-CCGGGUCCGc--UGCCc- -3' miRNA: 3'- -CGGUGGUaGGUCUAGGUuaaACGGau -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 135798 | 0.67 | 0.989051 |
Target: 5'- gGCCGCUG-CCGGGUCCGc--UGCCc- -3' miRNA: 3'- -CGGUGGUaGGUCUAGGUuaaACGGau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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