miRNA display CGI


Results 41 - 60 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28909 3' -50.4 NC_006146.1 + 129461 0.67 0.989051
Target:  5'- gGCCAgCC--CCAGAUCUAGga-GCCUAg -3'
miRNA:   3'- -CGGU-GGuaGGUCUAGGUUaaaCGGAU- -5'
28909 3' -50.4 NC_006146.1 + 25159 0.67 0.989051
Target:  5'- uCUACC-UCCAGAUCCugcccgGCCa- -3'
miRNA:   3'- cGGUGGuAGGUCUAGGuuaaa-CGGau -5'
28909 3' -50.4 NC_006146.1 + 81054 0.67 0.989051
Target:  5'- gGCCACCAaaUUC---UCCAGUUUcGCCUAg -3'
miRNA:   3'- -CGGUGGU--AGGucuAGGUUAAA-CGGAU- -5'
28909 3' -50.4 NC_006146.1 + 137564 0.67 0.989051
Target:  5'- gGCCGCUG-CCGGGUCCGc--UGCCc- -3'
miRNA:   3'- -CGGUGGUaGGUCUAGGUuaaACGGau -5'
28909 3' -50.4 NC_006146.1 + 137471 0.67 0.989051
Target:  5'- gGCCGCUG-CCGGGUCCGc--UGCCc- -3'
miRNA:   3'- -CGGUGGUaGGUCUAGGUuaaACGGau -5'
28909 3' -50.4 NC_006146.1 + 137006 0.67 0.989051
Target:  5'- gGCCGCUG-CCGGGUCCGc--UGCCc- -3'
miRNA:   3'- -CGGUGGUaGGUCUAGGUuaaACGGau -5'
28909 3' -50.4 NC_006146.1 + 137192 0.67 0.989051
Target:  5'- gGCCGCUG-CCGGGUCCGc--UGCCc- -3'
miRNA:   3'- -CGGUGGUaGGUCUAGGUuaaACGGau -5'
28909 3' -50.4 NC_006146.1 + 137285 0.67 0.989051
Target:  5'- gGCCGCUG-CCGGGUCCGc--UGCCc- -3'
miRNA:   3'- -CGGUGGUaGGUCUAGGUuaaACGGau -5'
28909 3' -50.4 NC_006146.1 + 136820 0.67 0.989051
Target:  5'- gGCCGCUG-CCGGGUCCGc--UGCCc- -3'
miRNA:   3'- -CGGUGGUaGGUCUAGGUuaaACGGau -5'
28909 3' -50.4 NC_006146.1 + 136913 0.67 0.989051
Target:  5'- gGCCGCUG-CCGGGUCCGc--UGCCc- -3'
miRNA:   3'- -CGGUGGUaGGUCUAGGUuaaACGGau -5'
28909 3' -50.4 NC_006146.1 + 137099 0.67 0.989051
Target:  5'- gGCCGCUG-CCGGGUCCGc--UGCCc- -3'
miRNA:   3'- -CGGUGGUaGGUCUAGGUuaaACGGau -5'
28909 3' -50.4 NC_006146.1 + 102870 0.67 0.987535
Target:  5'- cGCCACCuggucguggCCGGGccCCAGUUUGCgCUu -3'
miRNA:   3'- -CGGUGGua-------GGUCUa-GGUUAAACG-GAu -5'
28909 3' -50.4 NC_006146.1 + 32775 0.67 0.987535
Target:  5'- uGCCcCCAUCCAG--CCGGc-UGCCUAu -3'
miRNA:   3'- -CGGuGGUAGGUCuaGGUUaaACGGAU- -5'
28909 3' -50.4 NC_006146.1 + 43762 0.67 0.987213
Target:  5'- -aCGCCGUCCAGcUCCAcgcggagcaGCCUAu -3'
miRNA:   3'- cgGUGGUAGGUCuAGGUuaaa-----CGGAU- -5'
28909 3' -50.4 NC_006146.1 + 139212 0.67 0.986885
Target:  5'- aGCCGCgGUCCcccacccuucccuGGUCCcugggcuGUUUGCCUGa -3'
miRNA:   3'- -CGGUGgUAGGu------------CUAGGu------UAAACGGAU- -5'
28909 3' -50.4 NC_006146.1 + 61996 0.67 0.985862
Target:  5'- uGUCACaUAUCCAGAUCUGAg-UGCCc- -3'
miRNA:   3'- -CGGUG-GUAGGUCUAGGUUaaACGGau -5'
28909 3' -50.4 NC_006146.1 + 111318 0.68 0.984022
Target:  5'- cGCCGCCcUCCAGAUcgCCAccugcGCCg- -3'
miRNA:   3'- -CGGUGGuAGGUCUA--GGUuaaa-CGGau -5'
28909 3' -50.4 NC_006146.1 + 158131 0.68 0.984022
Target:  5'- gGCCG-CGUCCAGGUCCGGcagGUCa- -3'
miRNA:   3'- -CGGUgGUAGGUCUAGGUUaaaCGGau -5'
28909 3' -50.4 NC_006146.1 + 95784 0.68 0.984022
Target:  5'- gGCC-CCGgcUCCAGAUCCuguacUGCCc- -3'
miRNA:   3'- -CGGuGGU--AGGUCUAGGuuaa-ACGGau -5'
28909 3' -50.4 NC_006146.1 + 63819 0.68 0.984022
Target:  5'- gGCCacgACUAUCCAGGUCU----UGCCg- -3'
miRNA:   3'- -CGG---UGGUAGGUCUAGGuuaaACGGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.