Results 61 - 80 of 89 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28909 | 3' | -50.4 | NC_006146.1 | + | 111318 | 0.68 | 0.984022 |
Target: 5'- cGCCGCCcUCCAGAUcgCCAccugcGCCg- -3' miRNA: 3'- -CGGUGGuAGGUCUA--GGUuaaa-CGGau -5' |
|||||||
28909 | 3' | -50.4 | NC_006146.1 | + | 49144 | 0.68 | 0.984022 |
Target: 5'- aGCCACCAggcgcacggguUCCAGggUCAGccugUUGCCc- -3' miRNA: 3'- -CGGUGGU-----------AGGUCuaGGUUa---AACGGau -5' |
|||||||
28909 | 3' | -50.4 | NC_006146.1 | + | 149193 | 0.68 | 0.982006 |
Target: 5'- aGCCGgaGUCCAGAggggcCCGAgg-GCCUGa -3' miRNA: 3'- -CGGUggUAGGUCUa----GGUUaaaCGGAU- -5' |
|||||||
28909 | 3' | -50.4 | NC_006146.1 | + | 146115 | 0.68 | 0.982006 |
Target: 5'- aGCCGgaGUCCAGAggggcCCGAgg-GCCUGa -3' miRNA: 3'- -CGGUggUAGGUCUa----GGUUaaaCGGAU- -5' |
|||||||
28909 | 3' | -50.4 | NC_006146.1 | + | 143037 | 0.68 | 0.982006 |
Target: 5'- aGCCGgaGUCCAGAggggcCCGAgg-GCCUGa -3' miRNA: 3'- -CGGUggUAGGUCUa----GGUUaaaCGGAU- -5' |
|||||||
28909 | 3' | -50.4 | NC_006146.1 | + | 60792 | 0.68 | 0.982006 |
Target: 5'- --aGCCGgaCCAGGUCCAGg--GCCUGg -3' miRNA: 3'- cggUGGUa-GGUCUAGGUUaaaCGGAU- -5' |
|||||||
28909 | 3' | -50.4 | NC_006146.1 | + | 155349 | 0.68 | 0.982006 |
Target: 5'- aGCCGgaGUCCAGAggggcCCGAgg-GCCUGa -3' miRNA: 3'- -CGGUggUAGGUCUa----GGUUaaaCGGAU- -5' |
|||||||
28909 | 3' | -50.4 | NC_006146.1 | + | 158428 | 0.68 | 0.982006 |
Target: 5'- aGCCGgaGUCCAGAggggcCCGAgg-GCCUGa -3' miRNA: 3'- -CGGUggUAGGUCUa----GGUUaaaCGGAU- -5' |
|||||||
28909 | 3' | -50.4 | NC_006146.1 | + | 152271 | 0.68 | 0.982006 |
Target: 5'- aGCCGgaGUCCAGAggggcCCGAgg-GCCUGa -3' miRNA: 3'- -CGGUggUAGGUCUa----GGUUaaaCGGAU- -5' |
|||||||
28909 | 3' | -50.4 | NC_006146.1 | + | 23747 | 0.68 | 0.97741 |
Target: 5'- cGCCGCCG-CCGGGUCaac--UGCCg- -3' miRNA: 3'- -CGGUGGUaGGUCUAGguuaaACGGau -5' |
|||||||
28909 | 3' | -50.4 | NC_006146.1 | + | 162847 | 0.68 | 0.974541 |
Target: 5'- uGCCAgacacccCCAgggCCGGGUCCAGcgggUGCCa- -3' miRNA: 3'- -CGGU-------GGUa--GGUCUAGGUUaa--ACGGau -5' |
|||||||
28909 | 3' | -50.4 | NC_006146.1 | + | 157967 | 0.69 | 0.972003 |
Target: 5'- gGCCACCGggCGGggCCAGg--GCCUc -3' miRNA: 3'- -CGGUGGUagGUCuaGGUUaaaCGGAu -5' |
|||||||
28909 | 3' | -50.4 | NC_006146.1 | + | 142578 | 0.69 | 0.972003 |
Target: 5'- gGCCACCGggCGGggCCAGg--GCCUc -3' miRNA: 3'- -CGGUGGUagGUCuaGGUUaaaCGGAu -5' |
|||||||
28909 | 3' | -50.4 | NC_006146.1 | + | 145656 | 0.69 | 0.972003 |
Target: 5'- gGCCACCGggCGGggCCAGg--GCCUc -3' miRNA: 3'- -CGGUGGUagGUCuaGGUUaaaCGGAu -5' |
|||||||
28909 | 3' | -50.4 | NC_006146.1 | + | 148733 | 0.69 | 0.972003 |
Target: 5'- gGCCACCGggCGGggCCAGg--GCCUc -3' miRNA: 3'- -CGGUGGUagGUCuaGGUUaaaCGGAu -5' |
|||||||
28909 | 3' | -50.4 | NC_006146.1 | + | 151811 | 0.69 | 0.972003 |
Target: 5'- gGCCACCGggCGGggCCAGg--GCCUc -3' miRNA: 3'- -CGGUGGUagGUCuaGGUUaaaCGGAu -5' |
|||||||
28909 | 3' | -50.4 | NC_006146.1 | + | 154889 | 0.69 | 0.972003 |
Target: 5'- gGCCACCGggCGGggCCAGg--GCCUc -3' miRNA: 3'- -CGGUGGUagGUCuaGGUUaaaCGGAu -5' |
|||||||
28909 | 3' | -50.4 | NC_006146.1 | + | 102967 | 0.69 | 0.962233 |
Target: 5'- aGCCGcCCAUCCGGGacauacUCCAcgGUggGCCg- -3' miRNA: 3'- -CGGU-GGUAGGUCU------AGGU--UAaaCGGau -5' |
|||||||
28909 | 3' | -50.4 | NC_006146.1 | + | 156710 | 0.7 | 0.950315 |
Target: 5'- cGCCuccCCGUCCAGGcUCCGGggguccaGCCUGg -3' miRNA: 3'- -CGGu--GGUAGGUCU-AGGUUaaa----CGGAU- -5' |
|||||||
28909 | 3' | -50.4 | NC_006146.1 | + | 131106 | 0.7 | 0.941109 |
Target: 5'- gGCCGCCGUcCCAGAagccgggagcUCCGGgcccaaGCCUGa -3' miRNA: 3'- -CGGUGGUA-GGUCU----------AGGUUaaa---CGGAU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home