miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28909 3' -50.4 NC_006146.1 + 3080 0.67 0.99165
Target:  5'- gGCUACCGUCCAGAccgcucuggagcUCUucuccgGCCUc -3'
miRNA:   3'- -CGGUGGUAGGUCU------------AGGuuaaa-CGGAu -5'
28909 3' -50.4 NC_006146.1 + 8888 0.67 0.99165
Target:  5'- uCCACCGUggagCCGGucucCCAGggUGCCUAu -3'
miRNA:   3'- cGGUGGUA----GGUCua--GGUUaaACGGAU- -5'
28909 3' -50.4 NC_006146.1 + 13227 0.67 0.989051
Target:  5'- gGCCugCggCCAGAcCCAGUUcuacaucaGCCUGg -3'
miRNA:   3'- -CGGugGuaGGUCUaGGUUAAa-------CGGAU- -5'
28909 3' -50.4 NC_006146.1 + 13988 0.66 0.992751
Target:  5'- cGCCGCCAcCCAGG-CCucg--GCCg- -3'
miRNA:   3'- -CGGUGGUaGGUCUaGGuuaaaCGGau -5'
28909 3' -50.4 NC_006146.1 + 17535 1.09 0.009053
Target:  5'- gGCCACCAUCCAGAUCCAAUUUGCCUAu -3'
miRNA:   3'- -CGGUGGUAGGUCUAGGUUAAACGGAU- -5'
28909 3' -50.4 NC_006146.1 + 23747 0.68 0.97741
Target:  5'- cGCCGCCG-CCGGGUCaac--UGCCg- -3'
miRNA:   3'- -CGGUGGUaGGUCUAGguuaaACGGau -5'
28909 3' -50.4 NC_006146.1 + 25159 0.67 0.989051
Target:  5'- uCUACC-UCCAGAUCCugcccgGCCa- -3'
miRNA:   3'- cGGUGGuAGGUCUAGGuuaaa-CGGau -5'
28909 3' -50.4 NC_006146.1 + 32775 0.67 0.987535
Target:  5'- uGCCcCCAUCCAG--CCGGc-UGCCUAu -3'
miRNA:   3'- -CGGuGGUAGGUCuaGGUUaaACGGAU- -5'
28909 3' -50.4 NC_006146.1 + 33240 0.67 0.990419
Target:  5'- gGCCGCCGg-CGGGUCCGccggGCCg- -3'
miRNA:   3'- -CGGUGGUagGUCUAGGUuaaaCGGau -5'
28909 3' -50.4 NC_006146.1 + 40955 0.67 0.99165
Target:  5'- cCCACC--CCAGGUCCG---UGCCg- -3'
miRNA:   3'- cGGUGGuaGGUCUAGGUuaaACGGau -5'
28909 3' -50.4 NC_006146.1 + 43701 0.66 0.994607
Target:  5'- gGCCACUacggcGUCCAGGUCCuggcgGAUUU-CCUc -3'
miRNA:   3'- -CGGUGG-----UAGGUCUAGG-----UUAAAcGGAu -5'
28909 3' -50.4 NC_006146.1 + 43762 0.67 0.987213
Target:  5'- -aCGCCGUCCAGcUCCAcgcggagcaGCCUAu -3'
miRNA:   3'- cgGUGGUAGGUCuAGGUuaaa-----CGGAU- -5'
28909 3' -50.4 NC_006146.1 + 49144 0.68 0.984022
Target:  5'- aGCCACCAggcgcacggguUCCAGggUCAGccugUUGCCc- -3'
miRNA:   3'- -CGGUGGU-----------AGGUCuaGGUUa---AACGGau -5'
28909 3' -50.4 NC_006146.1 + 49245 0.7 0.936118
Target:  5'- -gCACC-UCCGGGUCCAGg--GCCg- -3'
miRNA:   3'- cgGUGGuAGGUCUAGGUUaaaCGGau -5'
28909 3' -50.4 NC_006146.1 + 50311 0.71 0.924787
Target:  5'- cGCCGCCgggccuuGUCCAGGUCaaacUUGCCa- -3'
miRNA:   3'- -CGGUGG-------UAGGUCUAGguuaAACGGau -5'
28909 3' -50.4 NC_006146.1 + 52467 0.66 0.996058
Target:  5'- aGCCGCCGUgCAGGaCCucg--GCCa- -3'
miRNA:   3'- -CGGUGGUAgGUCUaGGuuaaaCGGau -5'
28909 3' -50.4 NC_006146.1 + 52851 0.67 0.989615
Target:  5'- cGCCGCCGcccccgcccgggggcUCCAGGUCCGug--GuCCUc -3'
miRNA:   3'- -CGGUGGU---------------AGGUCUAGGUuaaaC-GGAu -5'
28909 3' -50.4 NC_006146.1 + 53884 0.66 0.994607
Target:  5'- cGCCcCCGUagggcguagcCCAGGUCCAGg--GCCc- -3'
miRNA:   3'- -CGGuGGUA----------GGUCUAGGUUaaaCGGau -5'
28909 3' -50.4 NC_006146.1 + 54822 0.66 0.992751
Target:  5'- cGCCACCAUgcaCCAGGacgucgCCAcAUUUGUCa- -3'
miRNA:   3'- -CGGUGGUA---GGUCUa-----GGU-UAAACGGau -5'
28909 3' -50.4 NC_006146.1 + 57207 0.68 0.984022
Target:  5'- cGCCGCCGUCCccGGG-CCGGag-GCCg- -3'
miRNA:   3'- -CGGUGGUAGG--UCUaGGUUaaaCGGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.