miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28909 3' -50.4 NC_006146.1 + 60792 0.68 0.982006
Target:  5'- --aGCCGgaCCAGGUCCAGg--GCCUGg -3'
miRNA:   3'- cggUGGUa-GGUCUAGGUUaaaCGGAU- -5'
28909 3' -50.4 NC_006146.1 + 61996 0.67 0.985862
Target:  5'- uGUCACaUAUCCAGAUCUGAg-UGCCc- -3'
miRNA:   3'- -CGGUG-GUAGGUCUAGGUUaaACGGau -5'
28909 3' -50.4 NC_006146.1 + 63819 0.68 0.984022
Target:  5'- gGCCacgACUAUCCAGGUCU----UGCCg- -3'
miRNA:   3'- -CGG---UGGUAGGUCUAGGuuaaACGGau -5'
28909 3' -50.4 NC_006146.1 + 81054 0.67 0.989051
Target:  5'- gGCCACCAaaUUC---UCCAGUUUcGCCUAg -3'
miRNA:   3'- -CGGUGGU--AGGucuAGGUUAAA-CGGAU- -5'
28909 3' -50.4 NC_006146.1 + 95784 0.68 0.984022
Target:  5'- gGCC-CCGgcUCCAGAUCCuguacUGCCc- -3'
miRNA:   3'- -CGGuGGU--AGGUCUAGGuuaa-ACGGau -5'
28909 3' -50.4 NC_006146.1 + 95831 0.66 0.995379
Target:  5'- gGCC-CCGgcUCCAGAUCCuguacugGCCc- -3'
miRNA:   3'- -CGGuGGU--AGGUCUAGGuuaaa--CGGau -5'
28909 3' -50.4 NC_006146.1 + 95849 0.72 0.88681
Target:  5'- gGCCugCAUCCAGAagCGAUg-GCCg- -3'
miRNA:   3'- -CGGugGUAGGUCUagGUUAaaCGGau -5'
28909 3' -50.4 NC_006146.1 + 95879 0.66 0.995379
Target:  5'- gGCC-CCGguUCCAGAUCCuguacugGCCc- -3'
miRNA:   3'- -CGGuGGU--AGGUCUAGGuuaaa--CGGau -5'
28909 3' -50.4 NC_006146.1 + 95975 0.67 0.99165
Target:  5'- gGCC-CagguUCCAGAUCCuguacUGCCUGg -3'
miRNA:   3'- -CGGuGgu--AGGUCUAGGuuaa-ACGGAU- -5'
28909 3' -50.4 NC_006146.1 + 98548 0.7 0.936118
Target:  5'- cGCCGCCAgCCGG-UCCAGg--GCCc- -3'
miRNA:   3'- -CGGUGGUaGGUCuAGGUUaaaCGGau -5'
28909 3' -50.4 NC_006146.1 + 102870 0.67 0.987535
Target:  5'- cGCCACCuggucguggCCGGGccCCAGUUUGCgCUu -3'
miRNA:   3'- -CGGUGGua-------GGUCUa-GGUUAAACG-GAu -5'
28909 3' -50.4 NC_006146.1 + 102967 0.69 0.962233
Target:  5'- aGCCGcCCAUCCGGGacauacUCCAcgGUggGCCg- -3'
miRNA:   3'- -CGGU-GGUAGGUCU------AGGU--UAaaCGGau -5'
28909 3' -50.4 NC_006146.1 + 105176 0.66 0.992751
Target:  5'- gGCCgcACCGUCCAGugaCCGGg--GCCg- -3'
miRNA:   3'- -CGG--UGGUAGGUCua-GGUUaaaCGGau -5'
28909 3' -50.4 NC_006146.1 + 110488 0.66 0.993734
Target:  5'- uCCACCccggCCAGGUCCAGgagggUGCa-- -3'
miRNA:   3'- cGGUGGua--GGUCUAGGUUaa---ACGgau -5'
28909 3' -50.4 NC_006146.1 + 111318 0.68 0.984022
Target:  5'- cGCCGCCcUCCAGAUcgCCAccugcGCCg- -3'
miRNA:   3'- -CGGUGGuAGGUCUA--GGUuaaa-CGGau -5'
28909 3' -50.4 NC_006146.1 + 113592 0.81 0.453584
Target:  5'- aGCCACgCGUCCAGGUCCAcaaagGCCUc -3'
miRNA:   3'- -CGGUG-GUAGGUCUAGGUuaaa-CGGAu -5'
28909 3' -50.4 NC_006146.1 + 116231 0.67 0.99165
Target:  5'- cGCCACCGUCUgggAGGUCUAcgacgggGCCc- -3'
miRNA:   3'- -CGGUGGUAGG---UCUAGGUuaaa---CGGau -5'
28909 3' -50.4 NC_006146.1 + 116878 0.71 0.913538
Target:  5'- gGCCGCCcUCCGGAggcgCCAccuggUGCCg- -3'
miRNA:   3'- -CGGUGGuAGGUCUa---GGUuaa--ACGGau -5'
28909 3' -50.4 NC_006146.1 + 120810 0.66 0.996058
Target:  5'- cGCaACCGgagUCAGAUCCAgg-UGCCg- -3'
miRNA:   3'- -CGgUGGUa--GGUCUAGGUuaaACGGau -5'
28909 3' -50.4 NC_006146.1 + 121472 0.66 0.996058
Target:  5'- aUCGCCAacgCCGGGUCCAucGUggggGCCg- -3'
miRNA:   3'- cGGUGGUa--GGUCUAGGU--UAaa--CGGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.