miRNA display CGI


Results 41 - 60 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28909 3' -50.4 NC_006146.1 + 123311 0.66 0.992751
Target:  5'- gGCCGCCGagUGGAUCCGGgacGUCUGc -3'
miRNA:   3'- -CGGUGGUagGUCUAGGUUaaaCGGAU- -5'
28909 3' -50.4 NC_006146.1 + 125736 0.72 0.893873
Target:  5'- cGCCGCCG-CC-GAUCCGAg--GCCUc -3'
miRNA:   3'- -CGGUGGUaGGuCUAGGUUaaaCGGAu -5'
28909 3' -50.4 NC_006146.1 + 126115 0.8 0.492926
Target:  5'- -aCACCAUCCAGAUCCccg--GCCUGg -3'
miRNA:   3'- cgGUGGUAGGUCUAGGuuaaaCGGAU- -5'
28909 3' -50.4 NC_006146.1 + 128174 0.66 0.993734
Target:  5'- -gCACCGcCCGGAUCCGcggcUGCCa- -3'
miRNA:   3'- cgGUGGUaGGUCUAGGUuaa-ACGGau -5'
28909 3' -50.4 NC_006146.1 + 129461 0.67 0.989051
Target:  5'- gGCCAgCC--CCAGAUCUAGga-GCCUAg -3'
miRNA:   3'- -CGGU-GGuaGGUCUAGGUUaaaCGGAU- -5'
28909 3' -50.4 NC_006146.1 + 131106 0.7 0.941109
Target:  5'- gGCCGCCGUcCCAGAagccgggagcUCCGGgcccaaGCCUGa -3'
miRNA:   3'- -CGGUGGUA-GGUCU----------AGGUUaaa---CGGAU- -5'
28909 3' -50.4 NC_006146.1 + 135148 0.67 0.989051
Target:  5'- gGCCGCUG-CCGGGUCCGc--UGCCc- -3'
miRNA:   3'- -CGGUGGUaGGUCUAGGUuaaACGGau -5'
28909 3' -50.4 NC_006146.1 + 135241 0.67 0.989051
Target:  5'- gGCCGCUG-CCGGGUCCGc--UGCCc- -3'
miRNA:   3'- -CGGUGGUaGGUCUAGGUuaaACGGau -5'
28909 3' -50.4 NC_006146.1 + 135334 0.67 0.989051
Target:  5'- gGCCGCUG-CCGGGUCCGc--UGCCc- -3'
miRNA:   3'- -CGGUGGUaGGUCUAGGUuaaACGGau -5'
28909 3' -50.4 NC_006146.1 + 135427 0.67 0.989051
Target:  5'- gGCCGCUG-CCGGGUCCGc--UGCCc- -3'
miRNA:   3'- -CGGUGGUaGGUCUAGGUuaaACGGau -5'
28909 3' -50.4 NC_006146.1 + 135520 0.67 0.989051
Target:  5'- gGCCGCUG-CCGGGUCCGc--UGCCc- -3'
miRNA:   3'- -CGGUGGUaGGUCUAGGUuaaACGGau -5'
28909 3' -50.4 NC_006146.1 + 135613 0.67 0.989051
Target:  5'- gGCCGCUG-CCGGGUCCGc--UGCCc- -3'
miRNA:   3'- -CGGUGGUaGGUCUAGGUuaaACGGau -5'
28909 3' -50.4 NC_006146.1 + 135706 0.67 0.989051
Target:  5'- gGCCGCUG-CCGGGUCCGc--UGCCc- -3'
miRNA:   3'- -CGGUGGUaGGUCUAGGUuaaACGGau -5'
28909 3' -50.4 NC_006146.1 + 135798 0.67 0.989051
Target:  5'- gGCCGCUG-CCGGGUCCGc--UGCCc- -3'
miRNA:   3'- -CGGUGGUaGGUCUAGGUuaaACGGau -5'
28909 3' -50.4 NC_006146.1 + 135891 0.67 0.989051
Target:  5'- gGCCGCUG-CCGGGUCCGc--UGCCc- -3'
miRNA:   3'- -CGGUGGUaGGUCUAGGUuaaACGGau -5'
28909 3' -50.4 NC_006146.1 + 135984 0.67 0.989051
Target:  5'- gGCCGCUG-CCGGGUCCGc--UGCCc- -3'
miRNA:   3'- -CGGUGGUaGGUCUAGGUuaaACGGau -5'
28909 3' -50.4 NC_006146.1 + 136077 0.67 0.989051
Target:  5'- gGCCGCUG-CCGGGUCCGc--UGCCc- -3'
miRNA:   3'- -CGGUGGUaGGUCUAGGUuaaACGGau -5'
28909 3' -50.4 NC_006146.1 + 136170 0.67 0.989051
Target:  5'- gGCCGCUG-CCGGGUCCGc--UGCCc- -3'
miRNA:   3'- -CGGUGGUaGGUCUAGGUuaaACGGau -5'
28909 3' -50.4 NC_006146.1 + 136263 0.67 0.989051
Target:  5'- gGCCGCUG-CCGGGUCCGc--UGCCc- -3'
miRNA:   3'- -CGGUGGUaGGUCUAGGUuaaACGGau -5'
28909 3' -50.4 NC_006146.1 + 136356 0.67 0.989051
Target:  5'- gGCCGCUG-CCGGGUCCGc--UGCCc- -3'
miRNA:   3'- -CGGUGGUaGGUCUAGGUuaaACGGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.