miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28909 3' -50.4 NC_006146.1 + 162847 0.68 0.974541
Target:  5'- uGCCAgacacccCCAgggCCGGGUCCAGcgggUGCCa- -3'
miRNA:   3'- -CGGU-------GGUa--GGUCUAGGUUaa--ACGGau -5'
28909 3' -50.4 NC_006146.1 + 158428 0.68 0.982006
Target:  5'- aGCCGgaGUCCAGAggggcCCGAgg-GCCUGa -3'
miRNA:   3'- -CGGUggUAGGUCUa----GGUUaaaCGGAU- -5'
28909 3' -50.4 NC_006146.1 + 158131 0.68 0.984022
Target:  5'- gGCCG-CGUCCAGGUCCGGcagGUCa- -3'
miRNA:   3'- -CGGUgGUAGGUCUAGGUUaaaCGGau -5'
28909 3' -50.4 NC_006146.1 + 157967 0.69 0.972003
Target:  5'- gGCCACCGggCGGggCCAGg--GCCUc -3'
miRNA:   3'- -CGGUGGUagGUCuaGGUUaaaCGGAu -5'
28909 3' -50.4 NC_006146.1 + 156710 0.7 0.950315
Target:  5'- cGCCuccCCGUCCAGGcUCCGGggguccaGCCUGg -3'
miRNA:   3'- -CGGu--GGUAGGUCU-AGGUUaaa----CGGAU- -5'
28909 3' -50.4 NC_006146.1 + 155349 0.68 0.982006
Target:  5'- aGCCGgaGUCCAGAggggcCCGAgg-GCCUGa -3'
miRNA:   3'- -CGGUggUAGGUCUa----GGUUaaaCGGAU- -5'
28909 3' -50.4 NC_006146.1 + 154889 0.69 0.972003
Target:  5'- gGCCACCGggCGGggCCAGg--GCCUc -3'
miRNA:   3'- -CGGUGGUagGUCuaGGUUaaaCGGAu -5'
28909 3' -50.4 NC_006146.1 + 152271 0.68 0.982006
Target:  5'- aGCCGgaGUCCAGAggggcCCGAgg-GCCUGa -3'
miRNA:   3'- -CGGUggUAGGUCUa----GGUUaaaCGGAU- -5'
28909 3' -50.4 NC_006146.1 + 151811 0.69 0.972003
Target:  5'- gGCCACCGggCGGggCCAGg--GCCUc -3'
miRNA:   3'- -CGGUGGUagGUCuaGGUUaaaCGGAu -5'
28909 3' -50.4 NC_006146.1 + 149193 0.68 0.982006
Target:  5'- aGCCGgaGUCCAGAggggcCCGAgg-GCCUGa -3'
miRNA:   3'- -CGGUggUAGGUCUa----GGUUaaaCGGAU- -5'
28909 3' -50.4 NC_006146.1 + 148733 0.69 0.972003
Target:  5'- gGCCACCGggCGGggCCAGg--GCCUc -3'
miRNA:   3'- -CGGUGGUagGUCuaGGUUaaaCGGAu -5'
28909 3' -50.4 NC_006146.1 + 146115 0.68 0.982006
Target:  5'- aGCCGgaGUCCAGAggggcCCGAgg-GCCUGa -3'
miRNA:   3'- -CGGUggUAGGUCUa----GGUUaaaCGGAU- -5'
28909 3' -50.4 NC_006146.1 + 145656 0.69 0.972003
Target:  5'- gGCCACCGggCGGggCCAGg--GCCUc -3'
miRNA:   3'- -CGGUGGUagGUCuaGGUUaaaCGGAu -5'
28909 3' -50.4 NC_006146.1 + 143037 0.68 0.982006
Target:  5'- aGCCGgaGUCCAGAggggcCCGAgg-GCCUGa -3'
miRNA:   3'- -CGGUggUAGGUCUa----GGUUaaaCGGAU- -5'
28909 3' -50.4 NC_006146.1 + 142578 0.69 0.972003
Target:  5'- gGCCACCGggCGGggCCAGg--GCCUc -3'
miRNA:   3'- -CGGUGGUagGUCuaGGUUaaaCGGAu -5'
28909 3' -50.4 NC_006146.1 + 139212 0.67 0.986885
Target:  5'- aGCCGCgGUCCcccacccuucccuGGUCCcugggcuGUUUGCCUGa -3'
miRNA:   3'- -CGGUGgUAGGu------------CUAGGu------UAAACGGAU- -5'
28909 3' -50.4 NC_006146.1 + 137564 0.67 0.989051
Target:  5'- gGCCGCUG-CCGGGUCCGc--UGCCc- -3'
miRNA:   3'- -CGGUGGUaGGUCUAGGUuaaACGGau -5'
28909 3' -50.4 NC_006146.1 + 137471 0.67 0.989051
Target:  5'- gGCCGCUG-CCGGGUCCGc--UGCCc- -3'
miRNA:   3'- -CGGUGGUaGGUCUAGGUuaaACGGau -5'
28909 3' -50.4 NC_006146.1 + 137378 0.67 0.989051
Target:  5'- gGCCGCUG-CCGGGUCCGc--UGCCc- -3'
miRNA:   3'- -CGGUGGUaGGUCUAGGUuaaACGGau -5'
28909 3' -50.4 NC_006146.1 + 137285 0.67 0.989051
Target:  5'- gGCCGCUG-CCGGGUCCGc--UGCCc- -3'
miRNA:   3'- -CGGUGGUaGGUCUAGGUuaaACGGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.