Results 41 - 60 of 89 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28909 | 3' | -50.4 | NC_006146.1 | + | 135334 | 0.67 | 0.989051 |
Target: 5'- gGCCGCUG-CCGGGUCCGc--UGCCc- -3' miRNA: 3'- -CGGUGGUaGGUCUAGGUuaaACGGau -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 135241 | 0.67 | 0.989051 |
Target: 5'- gGCCGCUG-CCGGGUCCGc--UGCCc- -3' miRNA: 3'- -CGGUGGUaGGUCUAGGUuaaACGGau -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 135148 | 0.67 | 0.989051 |
Target: 5'- gGCCGCUG-CCGGGUCCGc--UGCCc- -3' miRNA: 3'- -CGGUGGUaGGUCUAGGUuaaACGGau -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 131106 | 0.7 | 0.941109 |
Target: 5'- gGCCGCCGUcCCAGAagccgggagcUCCGGgcccaaGCCUGa -3' miRNA: 3'- -CGGUGGUA-GGUCU----------AGGUUaaa---CGGAU- -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 129461 | 0.67 | 0.989051 |
Target: 5'- gGCCAgCC--CCAGAUCUAGga-GCCUAg -3' miRNA: 3'- -CGGU-GGuaGGUCUAGGUUaaaCGGAU- -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 128174 | 0.66 | 0.993734 |
Target: 5'- -gCACCGcCCGGAUCCGcggcUGCCa- -3' miRNA: 3'- cgGUGGUaGGUCUAGGUuaa-ACGGau -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 126115 | 0.8 | 0.492926 |
Target: 5'- -aCACCAUCCAGAUCCccg--GCCUGg -3' miRNA: 3'- cgGUGGUAGGUCUAGGuuaaaCGGAU- -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 125736 | 0.72 | 0.893873 |
Target: 5'- cGCCGCCG-CC-GAUCCGAg--GCCUc -3' miRNA: 3'- -CGGUGGUaGGuCUAGGUUaaaCGGAu -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 123311 | 0.66 | 0.992751 |
Target: 5'- gGCCGCCGagUGGAUCCGGgacGUCUGc -3' miRNA: 3'- -CGGUGGUagGUCUAGGUUaaaCGGAU- -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 121472 | 0.66 | 0.996058 |
Target: 5'- aUCGCCAacgCCGGGUCCAucGUggggGCCg- -3' miRNA: 3'- cGGUGGUa--GGUCUAGGU--UAaa--CGGau -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 120810 | 0.66 | 0.996058 |
Target: 5'- cGCaACCGgagUCAGAUCCAgg-UGCCg- -3' miRNA: 3'- -CGgUGGUa--GGUCUAGGUuaaACGGau -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 116878 | 0.71 | 0.913538 |
Target: 5'- gGCCGCCcUCCGGAggcgCCAccuggUGCCg- -3' miRNA: 3'- -CGGUGGuAGGUCUa---GGUuaa--ACGGau -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 116231 | 0.67 | 0.99165 |
Target: 5'- cGCCACCGUCUgggAGGUCUAcgacgggGCCc- -3' miRNA: 3'- -CGGUGGUAGG---UCUAGGUuaaa---CGGau -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 113592 | 0.81 | 0.453584 |
Target: 5'- aGCCACgCGUCCAGGUCCAcaaagGCCUc -3' miRNA: 3'- -CGGUG-GUAGGUCUAGGUuaaa-CGGAu -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 111318 | 0.68 | 0.984022 |
Target: 5'- cGCCGCCcUCCAGAUcgCCAccugcGCCg- -3' miRNA: 3'- -CGGUGGuAGGUCUA--GGUuaaa-CGGau -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 110488 | 0.66 | 0.993734 |
Target: 5'- uCCACCccggCCAGGUCCAGgagggUGCa-- -3' miRNA: 3'- cGGUGGua--GGUCUAGGUUaa---ACGgau -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 105176 | 0.66 | 0.992751 |
Target: 5'- gGCCgcACCGUCCAGugaCCGGg--GCCg- -3' miRNA: 3'- -CGG--UGGUAGGUCua-GGUUaaaCGGau -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 102967 | 0.69 | 0.962233 |
Target: 5'- aGCCGcCCAUCCGGGacauacUCCAcgGUggGCCg- -3' miRNA: 3'- -CGGU-GGUAGGUCU------AGGU--UAaaCGGau -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 102870 | 0.67 | 0.987535 |
Target: 5'- cGCCACCuggucguggCCGGGccCCAGUUUGCgCUu -3' miRNA: 3'- -CGGUGGua-------GGUCUa-GGUUAAACG-GAu -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 98548 | 0.7 | 0.936118 |
Target: 5'- cGCCGCCAgCCGG-UCCAGg--GCCc- -3' miRNA: 3'- -CGGUGGUaGGUCuAGGUUaaaCGGau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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