Results 61 - 80 of 89 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28909 | 3' | -50.4 | NC_006146.1 | + | 95975 | 0.67 | 0.99165 |
Target: 5'- gGCC-CagguUCCAGAUCCuguacUGCCUGg -3' miRNA: 3'- -CGGuGgu--AGGUCUAGGuuaa-ACGGAU- -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 95879 | 0.66 | 0.995379 |
Target: 5'- gGCC-CCGguUCCAGAUCCuguacugGCCc- -3' miRNA: 3'- -CGGuGGU--AGGUCUAGGuuaaa--CGGau -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 95849 | 0.72 | 0.88681 |
Target: 5'- gGCCugCAUCCAGAagCGAUg-GCCg- -3' miRNA: 3'- -CGGugGUAGGUCUagGUUAaaCGGau -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 95831 | 0.66 | 0.995379 |
Target: 5'- gGCC-CCGgcUCCAGAUCCuguacugGCCc- -3' miRNA: 3'- -CGGuGGU--AGGUCUAGGuuaaa--CGGau -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 95784 | 0.68 | 0.984022 |
Target: 5'- gGCC-CCGgcUCCAGAUCCuguacUGCCc- -3' miRNA: 3'- -CGGuGGU--AGGUCUAGGuuaa-ACGGau -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 81054 | 0.67 | 0.989051 |
Target: 5'- gGCCACCAaaUUC---UCCAGUUUcGCCUAg -3' miRNA: 3'- -CGGUGGU--AGGucuAGGUUAAA-CGGAU- -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 63819 | 0.68 | 0.984022 |
Target: 5'- gGCCacgACUAUCCAGGUCU----UGCCg- -3' miRNA: 3'- -CGG---UGGUAGGUCUAGGuuaaACGGau -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 61996 | 0.67 | 0.985862 |
Target: 5'- uGUCACaUAUCCAGAUCUGAg-UGCCc- -3' miRNA: 3'- -CGGUG-GUAGGUCUAGGUUaaACGGau -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 60792 | 0.68 | 0.982006 |
Target: 5'- --aGCCGgaCCAGGUCCAGg--GCCUGg -3' miRNA: 3'- cggUGGUa-GGUCUAGGUUaaaCGGAU- -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 57207 | 0.68 | 0.984022 |
Target: 5'- cGCCGCCGUCCccGGG-CCGGag-GCCg- -3' miRNA: 3'- -CGGUGGUAGG--UCUaGGUUaaaCGGau -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 54822 | 0.66 | 0.992751 |
Target: 5'- cGCCACCAUgcaCCAGGacgucgCCAcAUUUGUCa- -3' miRNA: 3'- -CGGUGGUA---GGUCUa-----GGU-UAAACGGau -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 53884 | 0.66 | 0.994607 |
Target: 5'- cGCCcCCGUagggcguagcCCAGGUCCAGg--GCCc- -3' miRNA: 3'- -CGGuGGUA----------GGUCUAGGUUaaaCGGau -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 52851 | 0.67 | 0.989615 |
Target: 5'- cGCCGCCGcccccgcccgggggcUCCAGGUCCGug--GuCCUc -3' miRNA: 3'- -CGGUGGU---------------AGGUCUAGGUuaaaC-GGAu -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 52467 | 0.66 | 0.996058 |
Target: 5'- aGCCGCCGUgCAGGaCCucg--GCCa- -3' miRNA: 3'- -CGGUGGUAgGUCUaGGuuaaaCGGau -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 50311 | 0.71 | 0.924787 |
Target: 5'- cGCCGCCgggccuuGUCCAGGUCaaacUUGCCa- -3' miRNA: 3'- -CGGUGG-------UAGGUCUAGguuaAACGGau -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 49245 | 0.7 | 0.936118 |
Target: 5'- -gCACC-UCCGGGUCCAGg--GCCg- -3' miRNA: 3'- cgGUGGuAGGUCUAGGUUaaaCGGau -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 49144 | 0.68 | 0.984022 |
Target: 5'- aGCCACCAggcgcacggguUCCAGggUCAGccugUUGCCc- -3' miRNA: 3'- -CGGUGGU-----------AGGUCuaGGUUa---AACGGau -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 43762 | 0.67 | 0.987213 |
Target: 5'- -aCGCCGUCCAGcUCCAcgcggagcaGCCUAu -3' miRNA: 3'- cgGUGGUAGGUCuAGGUuaaa-----CGGAU- -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 43701 | 0.66 | 0.994607 |
Target: 5'- gGCCACUacggcGUCCAGGUCCuggcgGAUUU-CCUc -3' miRNA: 3'- -CGGUGG-----UAGGUCUAGG-----UUAAAcGGAu -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 40955 | 0.67 | 0.99165 |
Target: 5'- cCCACC--CCAGGUCCG---UGCCg- -3' miRNA: 3'- cGGUGGuaGGUCUAGGUuaaACGGau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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