Results 81 - 89 of 89 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 28909 | 3' | -50.4 | NC_006146.1 | + | 33240 | 0.67 | 0.990419 |
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Target: 5'- gGCCGCCGg-CGGGUCCGccggGCCg- -3' miRNA: 3'- -CGGUGGUagGUCUAGGUuaaaCGGau -5' |
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| 28909 | 3' | -50.4 | NC_006146.1 | + | 32775 | 0.67 | 0.987535 |
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Target: 5'- uGCCcCCAUCCAG--CCGGc-UGCCUAu -3' miRNA: 3'- -CGGuGGUAGGUCuaGGUUaaACGGAU- -5' |
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| 28909 | 3' | -50.4 | NC_006146.1 | + | 25159 | 0.67 | 0.989051 |
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Target: 5'- uCUACC-UCCAGAUCCugcccgGCCa- -3' miRNA: 3'- cGGUGGuAGGUCUAGGuuaaa-CGGau -5' |
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| 28909 | 3' | -50.4 | NC_006146.1 | + | 23747 | 0.68 | 0.97741 |
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Target: 5'- cGCCGCCG-CCGGGUCaac--UGCCg- -3' miRNA: 3'- -CGGUGGUaGGUCUAGguuaaACGGau -5' |
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| 28909 | 3' | -50.4 | NC_006146.1 | + | 17535 | 1.09 | 0.009053 |
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Target: 5'- gGCCACCAUCCAGAUCCAAUUUGCCUAu -3' miRNA: 3'- -CGGUGGUAGGUCUAGGUUAAACGGAU- -5' |
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| 28909 | 3' | -50.4 | NC_006146.1 | + | 13988 | 0.66 | 0.992751 |
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Target: 5'- cGCCGCCAcCCAGG-CCucg--GCCg- -3' miRNA: 3'- -CGGUGGUaGGUCUaGGuuaaaCGGau -5' |
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| 28909 | 3' | -50.4 | NC_006146.1 | + | 13227 | 0.67 | 0.989051 |
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Target: 5'- gGCCugCggCCAGAcCCAGUUcuacaucaGCCUGg -3' miRNA: 3'- -CGGugGuaGGUCUaGGUUAAa-------CGGAU- -5' |
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| 28909 | 3' | -50.4 | NC_006146.1 | + | 8888 | 0.67 | 0.99165 |
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Target: 5'- uCCACCGUggagCCGGucucCCAGggUGCCUAu -3' miRNA: 3'- cGGUGGUA----GGUCua--GGUUaaACGGAU- -5' |
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| 28909 | 3' | -50.4 | NC_006146.1 | + | 3080 | 0.67 | 0.99165 |
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Target: 5'- gGCUACCGUCCAGAccgcucuggagcUCUucuccgGCCUc -3' miRNA: 3'- -CGGUGGUAGGUCU------------AGGuuaaa-CGGAu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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