Results 1 - 20 of 89 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28909 | 3' | -50.4 | NC_006146.1 | + | 95849 | 0.72 | 0.88681 |
Target: 5'- gGCCugCAUCCAGAagCGAUg-GCCg- -3' miRNA: 3'- -CGGugGUAGGUCUagGUUAaaCGGau -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 135427 | 0.67 | 0.989051 |
Target: 5'- gGCCGCUG-CCGGGUCCGc--UGCCc- -3' miRNA: 3'- -CGGUGGUaGGUCUAGGUuaaACGGau -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 135613 | 0.67 | 0.989051 |
Target: 5'- gGCCGCUG-CCGGGUCCGc--UGCCc- -3' miRNA: 3'- -CGGUGGUaGGUCUAGGUuaaACGGau -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 120810 | 0.66 | 0.996058 |
Target: 5'- cGCaACCGgagUCAGAUCCAgg-UGCCg- -3' miRNA: 3'- -CGgUGGUa--GGUCUAGGUuaaACGGau -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 131106 | 0.7 | 0.941109 |
Target: 5'- gGCCGCCGUcCCAGAagccgggagcUCCGGgcccaaGCCUGa -3' miRNA: 3'- -CGGUGGUA-GGUCU----------AGGUUaaa---CGGAU- -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 156710 | 0.7 | 0.950315 |
Target: 5'- cGCCuccCCGUCCAGGcUCCGGggguccaGCCUGg -3' miRNA: 3'- -CGGu--GGUAGGUCU-AGGUUaaa----CGGAU- -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 162847 | 0.68 | 0.974541 |
Target: 5'- uGCCAgacacccCCAgggCCGGGUCCAGcgggUGCCa- -3' miRNA: 3'- -CGGU-------GGUa--GGUCUAGGUUaa--ACGGau -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 49144 | 0.68 | 0.984022 |
Target: 5'- aGCCACCAggcgcacggguUCCAGggUCAGccugUUGCCc- -3' miRNA: 3'- -CGGUGGU-----------AGGUCuaGGUUa---AACGGau -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 139212 | 0.67 | 0.986885 |
Target: 5'- aGCCGCgGUCCcccacccuucccuGGUCCcugggcuGUUUGCCUGa -3' miRNA: 3'- -CGGUGgUAGGu------------CUAGGu------UAAACGGAU- -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 135334 | 0.67 | 0.989051 |
Target: 5'- gGCCGCUG-CCGGGUCCGc--UGCCc- -3' miRNA: 3'- -CGGUGGUaGGUCUAGGUuaaACGGau -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 102870 | 0.67 | 0.987535 |
Target: 5'- cGCCACCuggucguggCCGGGccCCAGUUUGCgCUu -3' miRNA: 3'- -CGGUGGua-------GGUCUa-GGUUAAACG-GAu -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 111318 | 0.68 | 0.984022 |
Target: 5'- cGCCGCCcUCCAGAUcgCCAccugcGCCg- -3' miRNA: 3'- -CGGUGGuAGGUCUA--GGUuaaa-CGGau -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 50311 | 0.71 | 0.924787 |
Target: 5'- cGCCGCCgggccuuGUCCAGGUCaaacUUGCCa- -3' miRNA: 3'- -CGGUGG-------UAGGUCUAGguuaAACGGau -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 135148 | 0.67 | 0.989051 |
Target: 5'- gGCCGCUG-CCGGGUCCGc--UGCCc- -3' miRNA: 3'- -CGGUGGUaGGUCUAGGUuaaACGGau -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 49245 | 0.7 | 0.936118 |
Target: 5'- -gCACC-UCCGGGUCCAGg--GCCg- -3' miRNA: 3'- cgGUGGuAGGUCUAGGUUaaaCGGau -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 158131 | 0.68 | 0.984022 |
Target: 5'- gGCCG-CGUCCAGGUCCGGcagGUCa- -3' miRNA: 3'- -CGGUgGUAGGUCUAGGUUaaaCGGau -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 135241 | 0.67 | 0.989051 |
Target: 5'- gGCCGCUG-CCGGGUCCGc--UGCCc- -3' miRNA: 3'- -CGGUGGUaGGUCUAGGUuaaACGGau -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 135520 | 0.67 | 0.989051 |
Target: 5'- gGCCGCUG-CCGGGUCCGc--UGCCc- -3' miRNA: 3'- -CGGUGGUaGGUCUAGGUuaaACGGau -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 98548 | 0.7 | 0.936118 |
Target: 5'- cGCCGCCAgCCGG-UCCAGg--GCCc- -3' miRNA: 3'- -CGGUGGUaGGUCuAGGUUaaaCGGau -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 102967 | 0.69 | 0.962233 |
Target: 5'- aGCCGcCCAUCCGGGacauacUCCAcgGUggGCCg- -3' miRNA: 3'- -CGGU-GGUAGGUCU------AGGU--UAaaCGGau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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