miRNA display CGI


Results 61 - 80 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28909 3' -50.4 NC_006146.1 + 54822 0.66 0.992751
Target:  5'- cGCCACCAUgcaCCAGGacgucgCCAcAUUUGUCa- -3'
miRNA:   3'- -CGGUGGUA---GGUCUa-----GGU-UAAACGGau -5'
28909 3' -50.4 NC_006146.1 + 105176 0.66 0.992751
Target:  5'- gGCCgcACCGUCCAGugaCCGGg--GCCg- -3'
miRNA:   3'- -CGG--UGGUAGGUCua-GGUUaaaCGGau -5'
28909 3' -50.4 NC_006146.1 + 123311 0.66 0.992751
Target:  5'- gGCCGCCGagUGGAUCCGGgacGUCUGc -3'
miRNA:   3'- -CGGUGGUagGUCUAGGUUaaaCGGAU- -5'
28909 3' -50.4 NC_006146.1 + 43701 0.66 0.994607
Target:  5'- gGCCACUacggcGUCCAGGUCCuggcgGAUUU-CCUc -3'
miRNA:   3'- -CGGUGG-----UAGGUCUAGG-----UUAAAcGGAu -5'
28909 3' -50.4 NC_006146.1 + 63819 0.68 0.984022
Target:  5'- gGCCacgACUAUCCAGGUCU----UGCCg- -3'
miRNA:   3'- -CGG---UGGUAGGUCUAGGuuaaACGGau -5'
28909 3' -50.4 NC_006146.1 + 158428 0.68 0.982006
Target:  5'- aGCCGgaGUCCAGAggggcCCGAgg-GCCUGa -3'
miRNA:   3'- -CGGUggUAGGUCUa----GGUUaaaCGGAU- -5'
28909 3' -50.4 NC_006146.1 + 155349 0.68 0.982006
Target:  5'- aGCCGgaGUCCAGAggggcCCGAgg-GCCUGa -3'
miRNA:   3'- -CGGUggUAGGUCUa----GGUUaaaCGGAU- -5'
28909 3' -50.4 NC_006146.1 + 113592 0.81 0.453584
Target:  5'- aGCCACgCGUCCAGGUCCAcaaagGCCUc -3'
miRNA:   3'- -CGGUG-GUAGGUCUAGGUuaaa-CGGAu -5'
28909 3' -50.4 NC_006146.1 + 126115 0.8 0.492926
Target:  5'- -aCACCAUCCAGAUCCccg--GCCUGg -3'
miRNA:   3'- cgGUGGUAGGUCUAGGuuaaaCGGAU- -5'
28909 3' -50.4 NC_006146.1 + 125736 0.72 0.893873
Target:  5'- cGCCGCCG-CC-GAUCCGAg--GCCUc -3'
miRNA:   3'- -CGGUGGUaGGuCUAGGUUaaaCGGAu -5'
28909 3' -50.4 NC_006146.1 + 116878 0.71 0.913538
Target:  5'- gGCCGCCcUCCGGAggcgCCAccuggUGCCg- -3'
miRNA:   3'- -CGGUGGuAGGUCUa---GGUuaa--ACGGau -5'
28909 3' -50.4 NC_006146.1 + 142578 0.69 0.972003
Target:  5'- gGCCACCGggCGGggCCAGg--GCCUc -3'
miRNA:   3'- -CGGUGGUagGUCuaGGUUaaaCGGAu -5'
28909 3' -50.4 NC_006146.1 + 145656 0.69 0.972003
Target:  5'- gGCCACCGggCGGggCCAGg--GCCUc -3'
miRNA:   3'- -CGGUGGUagGUCuaGGUUaaaCGGAu -5'
28909 3' -50.4 NC_006146.1 + 148733 0.69 0.972003
Target:  5'- gGCCACCGggCGGggCCAGg--GCCUc -3'
miRNA:   3'- -CGGUGGUagGUCuaGGUUaaaCGGAu -5'
28909 3' -50.4 NC_006146.1 + 23747 0.68 0.97741
Target:  5'- cGCCGCCG-CCGGGUCaac--UGCCg- -3'
miRNA:   3'- -CGGUGGUaGGUCUAGguuaaACGGau -5'
28909 3' -50.4 NC_006146.1 + 60792 0.68 0.982006
Target:  5'- --aGCCGgaCCAGGUCCAGg--GCCUGg -3'
miRNA:   3'- cggUGGUa-GGUCUAGGUUaaaCGGAU- -5'
28909 3' -50.4 NC_006146.1 + 143037 0.68 0.982006
Target:  5'- aGCCGgaGUCCAGAggggcCCGAgg-GCCUGa -3'
miRNA:   3'- -CGGUggUAGGUCUa----GGUUaaaCGGAU- -5'
28909 3' -50.4 NC_006146.1 + 146115 0.68 0.982006
Target:  5'- aGCCGgaGUCCAGAggggcCCGAgg-GCCUGa -3'
miRNA:   3'- -CGGUggUAGGUCUa----GGUUaaaCGGAU- -5'
28909 3' -50.4 NC_006146.1 + 149193 0.68 0.982006
Target:  5'- aGCCGgaGUCCAGAggggcCCGAgg-GCCUGa -3'
miRNA:   3'- -CGGUggUAGGUCUa----GGUUaaaCGGAU- -5'
28909 3' -50.4 NC_006146.1 + 152271 0.68 0.982006
Target:  5'- aGCCGgaGUCCAGAggggcCCGAgg-GCCUGa -3'
miRNA:   3'- -CGGUggUAGGUCUa----GGUUaaaCGGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.