Results 81 - 89 of 89 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28909 | 3' | -50.4 | NC_006146.1 | + | 63819 | 0.68 | 0.984022 |
Target: 5'- gGCCacgACUAUCCAGGUCU----UGCCg- -3' miRNA: 3'- -CGG---UGGUAGGUCUAGGuuaaACGGau -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 158428 | 0.68 | 0.982006 |
Target: 5'- aGCCGgaGUCCAGAggggcCCGAgg-GCCUGa -3' miRNA: 3'- -CGGUggUAGGUCUa----GGUUaaaCGGAU- -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 155349 | 0.68 | 0.982006 |
Target: 5'- aGCCGgaGUCCAGAggggcCCGAgg-GCCUGa -3' miRNA: 3'- -CGGUggUAGGUCUa----GGUUaaaCGGAU- -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 152271 | 0.68 | 0.982006 |
Target: 5'- aGCCGgaGUCCAGAggggcCCGAgg-GCCUGa -3' miRNA: 3'- -CGGUggUAGGUCUa----GGUUaaaCGGAU- -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 149193 | 0.68 | 0.982006 |
Target: 5'- aGCCGgaGUCCAGAggggcCCGAgg-GCCUGa -3' miRNA: 3'- -CGGUggUAGGUCUa----GGUUaaaCGGAU- -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 146115 | 0.68 | 0.982006 |
Target: 5'- aGCCGgaGUCCAGAggggcCCGAgg-GCCUGa -3' miRNA: 3'- -CGGUggUAGGUCUa----GGUUaaaCGGAU- -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 143037 | 0.68 | 0.982006 |
Target: 5'- aGCCGgaGUCCAGAggggcCCGAgg-GCCUGa -3' miRNA: 3'- -CGGUggUAGGUCUa----GGUUaaaCGGAU- -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 60792 | 0.68 | 0.982006 |
Target: 5'- --aGCCGgaCCAGGUCCAGg--GCCUGg -3' miRNA: 3'- cggUGGUa-GGUCUAGGUUaaaCGGAU- -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 17535 | 1.09 | 0.009053 |
Target: 5'- gGCCACCAUCCAGAUCCAAUUUGCCUAu -3' miRNA: 3'- -CGGUGGUAGGUCUAGGUUAAACGGAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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