Results 1 - 20 of 89 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28909 | 3' | -50.4 | NC_006146.1 | + | 95784 | 0.68 | 0.984022 |
Target: 5'- gGCC-CCGgcUCCAGAUCCuguacUGCCc- -3' miRNA: 3'- -CGGuGGU--AGGUCUAGGuuaa-ACGGau -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 8888 | 0.67 | 0.99165 |
Target: 5'- uCCACCGUggagCCGGucucCCAGggUGCCUAu -3' miRNA: 3'- cGGUGGUA----GGUCua--GGUUaaACGGAU- -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 81054 | 0.67 | 0.989051 |
Target: 5'- gGCCACCAaaUUC---UCCAGUUUcGCCUAg -3' miRNA: 3'- -CGGUGGU--AGGucuAGGUUAAA-CGGAU- -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 25159 | 0.67 | 0.989051 |
Target: 5'- uCUACC-UCCAGAUCCugcccgGCCa- -3' miRNA: 3'- cGGUGGuAGGUCUAGGuuaaa-CGGau -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 129461 | 0.67 | 0.989051 |
Target: 5'- gGCCAgCC--CCAGAUCUAGga-GCCUAg -3' miRNA: 3'- -CGGU-GGuaGGUCUAGGUUaaaCGGAU- -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 13227 | 0.67 | 0.989051 |
Target: 5'- gGCCugCggCCAGAcCCAGUUcuacaucaGCCUGg -3' miRNA: 3'- -CGGugGuaGGUCUaGGUUAAa-------CGGAU- -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 43762 | 0.67 | 0.987213 |
Target: 5'- -aCGCCGUCCAGcUCCAcgcggagcaGCCUAu -3' miRNA: 3'- cgGUGGUAGGUCuAGGUuaaa-----CGGAU- -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 61996 | 0.67 | 0.985862 |
Target: 5'- uGUCACaUAUCCAGAUCUGAg-UGCCc- -3' miRNA: 3'- -CGGUG-GUAGGUCUAGGUUaaACGGau -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 57207 | 0.68 | 0.984022 |
Target: 5'- cGCCGCCGUCCccGGG-CCGGag-GCCg- -3' miRNA: 3'- -CGGUGGUAGG--UCUaGGUUaaaCGGau -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 40955 | 0.67 | 0.99165 |
Target: 5'- cCCACC--CCAGGUCCG---UGCCg- -3' miRNA: 3'- cGGUGGuaGGUCUAGGUuaaACGGau -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 95975 | 0.67 | 0.99165 |
Target: 5'- gGCC-CagguUCCAGAUCCuguacUGCCUGg -3' miRNA: 3'- -CGGuGgu--AGGUCUAGGuuaa-ACGGAU- -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 116231 | 0.67 | 0.99165 |
Target: 5'- cGCCACCGUCUgggAGGUCUAcgacgggGCCc- -3' miRNA: 3'- -CGGUGGUAGG---UCUAGGUuaaa---CGGau -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 95879 | 0.66 | 0.995379 |
Target: 5'- gGCC-CCGguUCCAGAUCCuguacugGCCc- -3' miRNA: 3'- -CGGuGGU--AGGUCUAGGuuaaa--CGGau -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 95831 | 0.66 | 0.995379 |
Target: 5'- gGCC-CCGgcUCCAGAUCCuguacugGCCc- -3' miRNA: 3'- -CGGuGGU--AGGUCUAGGuuaaa--CGGau -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 128174 | 0.66 | 0.993734 |
Target: 5'- -gCACCGcCCGGAUCCGcggcUGCCa- -3' miRNA: 3'- cgGUGGUaGGUCUAGGUuaa-ACGGau -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 43701 | 0.66 | 0.994607 |
Target: 5'- gGCCACUacggcGUCCAGGUCCuggcgGAUUU-CCUc -3' miRNA: 3'- -CGGUGG-----UAGGUCUAGG-----UUAAAcGGAu -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 123311 | 0.66 | 0.992751 |
Target: 5'- gGCCGCCGagUGGAUCCGGgacGUCUGc -3' miRNA: 3'- -CGGUGGUagGUCUAGGUUaaaCGGAU- -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 105176 | 0.66 | 0.992751 |
Target: 5'- gGCCgcACCGUCCAGugaCCGGg--GCCg- -3' miRNA: 3'- -CGG--UGGUAGGUCua-GGUUaaaCGGau -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 13988 | 0.66 | 0.992751 |
Target: 5'- cGCCGCCAcCCAGG-CCucg--GCCg- -3' miRNA: 3'- -CGGUGGUaGGUCUaGGuuaaaCGGau -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 54822 | 0.66 | 0.992751 |
Target: 5'- cGCCACCAUgcaCCAGGacgucgCCAcAUUUGUCa- -3' miRNA: 3'- -CGGUGGUA---GGUCUa-----GGU-UAAACGGau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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