miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28909 5' -55.2 NC_006146.1 + 33183 0.66 0.954641
Target:  5'- gCGCCGCCGcucGGUCcugggccucCGGGUGCUccuggugcuccGGGg -3'
miRNA:   3'- -GCGGCGGU---CUAGuua------GCCUACGA-----------CCC- -5'
28909 5' -55.2 NC_006146.1 + 150548 0.66 0.950657
Target:  5'- cCGCgGCCAGGaggCAGgagaacacgCGGAucUGCUGGc -3'
miRNA:   3'- -GCGgCGGUCUa--GUUa--------GCCU--ACGACCc -5'
28909 5' -55.2 NC_006146.1 + 117578 0.66 0.950657
Target:  5'- gGCCGCCGGGccuccUCGGgcUCGGAcuccgGCcaGGGa -3'
miRNA:   3'- gCGGCGGUCU-----AGUU--AGCCUa----CGa-CCC- -5'
28909 5' -55.2 NC_006146.1 + 75757 0.66 0.950657
Target:  5'- uCGCCGCCgAGuUCAggCGGAccaaGCccagGGGg -3'
miRNA:   3'- -GCGGCGG-UCuAGUuaGCCUa---CGa---CCC- -5'
28909 5' -55.2 NC_006146.1 + 108541 0.66 0.946446
Target:  5'- gGCCucuCCGGcgCGgcGUUGGAgugGCUGGGc -3'
miRNA:   3'- gCGGc--GGUCuaGU--UAGCCUa--CGACCC- -5'
28909 5' -55.2 NC_006146.1 + 50002 0.66 0.946446
Target:  5'- gGCCGUCGGAggCGAUCcgguuGAUGCagccGGGg -3'
miRNA:   3'- gCGGCGGUCUa-GUUAGc----CUACGa---CCC- -5'
28909 5' -55.2 NC_006146.1 + 122388 0.66 0.946446
Target:  5'- gGCgGCCAGGa-AcgCGGAggUGCUGGa -3'
miRNA:   3'- gCGgCGGUCUagUuaGCCU--ACGACCc -5'
28909 5' -55.2 NC_006146.1 + 137566 0.66 0.946446
Target:  5'- cCGCUGCCGGGUCcgcugcccGGUCcuGGA-GCUcGGGc -3'
miRNA:   3'- -GCGGCGGUCUAG--------UUAG--CCUaCGA-CCC- -5'
28909 5' -55.2 NC_006146.1 + 13987 0.66 0.942006
Target:  5'- gCGCCGCCacccAGGccUCGGcCGGGcuggUGCUGGa -3'
miRNA:   3'- -GCGGCGG----UCU--AGUUaGCCU----ACGACCc -5'
28909 5' -55.2 NC_006146.1 + 49841 0.67 0.933426
Target:  5'- uGCCGCaggcgggucaggAGGUCGucaaaguccaucaccGUCGGGagGCUGGGg -3'
miRNA:   3'- gCGGCGg-----------UCUAGU---------------UAGCCUa-CGACCC- -5'
28909 5' -55.2 NC_006146.1 + 155091 0.67 0.932426
Target:  5'- uGCCggGCCAGAUCAgggagGUCaGGAacaccuucUGgUGGGg -3'
miRNA:   3'- gCGG--CGGUCUAGU-----UAG-CCU--------ACgACCC- -5'
28909 5' -55.2 NC_006146.1 + 154657 0.67 0.927284
Target:  5'- uGCCGCCGGcugCAccgugguggCGGGgggcgcugcUGCUGGGu -3'
miRNA:   3'- gCGGCGGUCua-GUua-------GCCU---------ACGACCC- -5'
28909 5' -55.2 NC_006146.1 + 18858 0.67 0.927284
Target:  5'- gCGCUGCCGGGgugg-UGGAcgUGCgGGGg -3'
miRNA:   3'- -GCGGCGGUCUaguuaGCCU--ACGaCCC- -5'
28909 5' -55.2 NC_006146.1 + 135708 0.67 0.920248
Target:  5'- cCGCUGCCGGGUCcgcugcccguccugGAgcUCGGG-GCcGGGg -3'
miRNA:   3'- -GCGGCGGUCUAG--------------UU--AGCCUaCGaCCC- -5'
28909 5' -55.2 NC_006146.1 + 32125 0.67 0.916295
Target:  5'- gGgUGCCAcGUCAccccgGGGUGCUGGGg -3'
miRNA:   3'- gCgGCGGUcUAGUuag--CCUACGACCC- -5'
28909 5' -55.2 NC_006146.1 + 75593 0.67 0.916295
Target:  5'- gGCCGCCGucccGAUCAAggGGggGUaacgaaUGGGa -3'
miRNA:   3'- gCGGCGGU----CUAGUUagCCuaCG------ACCC- -5'
28909 5' -55.2 NC_006146.1 + 129624 0.67 0.916295
Target:  5'- cCGUCGCCGGGUCcuccgCGGGcgcgUGCUccgcccGGGa -3'
miRNA:   3'- -GCGGCGGUCUAGuua--GCCU----ACGA------CCC- -5'
28909 5' -55.2 NC_006146.1 + 135955 0.67 0.916295
Target:  5'- gGgUGCCAcGUCAccccgGGGUGCUGGGg -3'
miRNA:   3'- gCgGCGGUcUAGUuag--CCUACGACCC- -5'
28909 5' -55.2 NC_006146.1 + 102808 0.67 0.916295
Target:  5'- gGCCGCCcaccuGGAUCGcgCGGggGCUc-- -3'
miRNA:   3'- gCGGCGG-----UCUAGUuaGCCuaCGAccc -5'
28909 5' -55.2 NC_006146.1 + 115155 0.67 0.90437
Target:  5'- cCGCCGCCGGG-CGGUgGaGAUcUUGGGc -3'
miRNA:   3'- -GCGGCGGUCUaGUUAgC-CUAcGACCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.