Results 41 - 60 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
28909 | 5' | -55.2 | NC_006146.1 | + | 135429 | 0.68 | 0.898062 |
Target: 5'- cCGCUGCCGGGUCcgcugcccGGUCcuGGA-GCUcGGGg -3' miRNA: 3'- -GCGGCGGUCUAG--------UUAG--CCUaCGA-CCC- -5' |
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28909 | 5' | -55.2 | NC_006146.1 | + | 21256 | 0.68 | 0.898062 |
Target: 5'- gCGCUGCCGGcgCGugcUCGaccuGGUGCUGGcGg -3' miRNA: 3'- -GCGGCGGUCuaGUu--AGC----CUACGACC-C- -5' |
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28909 | 5' | -55.2 | NC_006146.1 | + | 136915 | 0.68 | 0.898062 |
Target: 5'- cCGCUGCCGGGUCcgcugcccGGUCcuGGA-GCUcGGGg -3' miRNA: 3'- -GCGGCGGUCUAG--------UUAG--CCUaCGA-CCC- -5' |
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28909 | 5' | -55.2 | NC_006146.1 | + | 67227 | 0.68 | 0.877786 |
Target: 5'- gGCCgGCCAGGcaCAGgaagccaCGGAgGCUGGGg -3' miRNA: 3'- gCGG-CGGUCUa-GUUa------GCCUaCGACCC- -5' |
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28909 | 5' | -55.2 | NC_006146.1 | + | 57048 | 0.68 | 0.891526 |
Target: 5'- aGCCGCCAGGguuga-GGcgGgaGGGg -3' miRNA: 3'- gCGGCGGUCUaguuagCCuaCgaCCC- -5' |
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28909 | 5' | -55.2 | NC_006146.1 | + | 135150 | 0.68 | 0.898062 |
Target: 5'- cCGCUGCCGGGUCcgcugcccGGUCcuGGA-GCUcGGGg -3' miRNA: 3'- -GCGGCGGUCUAG--------UUAG--CCUaCGA-CCC- -5' |
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28909 | 5' | -55.2 | NC_006146.1 | + | 135243 | 0.68 | 0.898062 |
Target: 5'- cCGCUGCCGGGUCcgcugcccGGUCcuGGA-GCUcGGGg -3' miRNA: 3'- -GCGGCGGUCUAG--------UUAG--CCUaCGA-CCC- -5' |
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28909 | 5' | -55.2 | NC_006146.1 | + | 135336 | 0.68 | 0.898062 |
Target: 5'- cCGCUGCCGGGUCcgcugcccGGUCcuGGA-GCUcGGGg -3' miRNA: 3'- -GCGGCGGUCUAG--------UUAG--CCUaCGA-CCC- -5' |
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28909 | 5' | -55.2 | NC_006146.1 | + | 154657 | 0.67 | 0.927284 |
Target: 5'- uGCCGCCGGcugCAccgugguggCGGGgggcgcugcUGCUGGGu -3' miRNA: 3'- gCGGCGGUCua-GUua-------GCCU---------ACGACCC- -5' |
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28909 | 5' | -55.2 | NC_006146.1 | + | 155091 | 0.67 | 0.932426 |
Target: 5'- uGCCggGCCAGAUCAgggagGUCaGGAacaccuucUGgUGGGg -3' miRNA: 3'- gCGG--CGGUCUAGU-----UAG-CCU--------ACgACCC- -5' |
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28909 | 5' | -55.2 | NC_006146.1 | + | 49841 | 0.67 | 0.933426 |
Target: 5'- uGCCGCaggcgggucaggAGGUCGucaaaguccaucaccGUCGGGagGCUGGGg -3' miRNA: 3'- gCGGCGg-----------UCUAGU---------------UAGCCUa-CGACCC- -5' |
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28909 | 5' | -55.2 | NC_006146.1 | + | 18858 | 0.67 | 0.927284 |
Target: 5'- gCGCUGCCGGGgugg-UGGAcgUGCgGGGg -3' miRNA: 3'- -GCGGCGGUCUaguuaGCCU--ACGaCCC- -5' |
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28909 | 5' | -55.2 | NC_006146.1 | + | 129624 | 0.67 | 0.916295 |
Target: 5'- cCGUCGCCGGGUCcuccgCGGGcgcgUGCUccgcccGGGa -3' miRNA: 3'- -GCGGCGGUCUAGuua--GCCU----ACGA------CCC- -5' |
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28909 | 5' | -55.2 | NC_006146.1 | + | 135955 | 0.67 | 0.916295 |
Target: 5'- gGgUGCCAcGUCAccccgGGGUGCUGGGg -3' miRNA: 3'- gCgGCGGUcUAGUuag--CCUACGACCC- -5' |
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28909 | 5' | -55.2 | NC_006146.1 | + | 102808 | 0.67 | 0.916295 |
Target: 5'- gGCCGCCcaccuGGAUCGcgCGGggGCUc-- -3' miRNA: 3'- gCGGCGG-----UCUAGUuaGCCuaCGAccc -5' |
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28909 | 5' | -55.2 | NC_006146.1 | + | 32125 | 0.67 | 0.916295 |
Target: 5'- gGgUGCCAcGUCAccccgGGGUGCUGGGg -3' miRNA: 3'- gCgGCGGUcUAGUuag--CCUACGACCC- -5' |
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28909 | 5' | -55.2 | NC_006146.1 | + | 115155 | 0.67 | 0.90437 |
Target: 5'- cCGCCGCCGGG-CGGUgGaGAUcUUGGGc -3' miRNA: 3'- -GCGGCGGUCUaGUUAgC-CUAcGACCC- -5' |
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28909 | 5' | -55.2 | NC_006146.1 | + | 135708 | 0.67 | 0.920248 |
Target: 5'- cCGCUGCCGGGUCcgcugcccguccugGAgcUCGGG-GCcGGGg -3' miRNA: 3'- -GCGGCGGUCUAG--------------UU--AGCCUaCGaCCC- -5' |
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28909 | 5' | -55.2 | NC_006146.1 | + | 75593 | 0.67 | 0.916295 |
Target: 5'- gGCCGCCGucccGAUCAAggGGggGUaacgaaUGGGa -3' miRNA: 3'- gCGGCGGU----CUAGUUagCCuaCG------ACCC- -5' |
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28909 | 5' | -55.2 | NC_006146.1 | + | 13987 | 0.66 | 0.942006 |
Target: 5'- gCGCCGCCacccAGGccUCGGcCGGGcuggUGCUGGa -3' miRNA: 3'- -GCGGCGG----UCU--AGUUaGCCU----ACGACCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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