Results 61 - 68 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28909 | 5' | -55.2 | NC_006146.1 | + | 150548 | 0.66 | 0.950657 |
Target: 5'- cCGCgGCCAGGaggCAGgagaacacgCGGAucUGCUGGc -3' miRNA: 3'- -GCGgCGGUCUa--GUUa--------GCCU--ACGACCc -5' |
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28909 | 5' | -55.2 | NC_006146.1 | + | 75757 | 0.66 | 0.950657 |
Target: 5'- uCGCCGCCgAGuUCAggCGGAccaaGCccagGGGg -3' miRNA: 3'- -GCGGCGG-UCuAGUuaGCCUa---CGa---CCC- -5' |
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28909 | 5' | -55.2 | NC_006146.1 | + | 122388 | 0.66 | 0.946446 |
Target: 5'- gGCgGCCAGGa-AcgCGGAggUGCUGGa -3' miRNA: 3'- gCGgCGGUCUagUuaGCCU--ACGACCc -5' |
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28909 | 5' | -55.2 | NC_006146.1 | + | 108541 | 0.66 | 0.946446 |
Target: 5'- gGCCucuCCGGcgCGgcGUUGGAgugGCUGGGc -3' miRNA: 3'- gCGGc--GGUCuaGU--UAGCCUa--CGACCC- -5' |
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28909 | 5' | -55.2 | NC_006146.1 | + | 50002 | 0.66 | 0.946446 |
Target: 5'- gGCCGUCGGAggCGAUCcgguuGAUGCagccGGGg -3' miRNA: 3'- gCGGCGGUCUa-GUUAGc----CUACGa---CCC- -5' |
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28909 | 5' | -55.2 | NC_006146.1 | + | 13987 | 0.66 | 0.942006 |
Target: 5'- gCGCCGCCacccAGGccUCGGcCGGGcuggUGCUGGa -3' miRNA: 3'- -GCGGCGG----UCU--AGUUaGCCU----ACGACCc -5' |
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28909 | 5' | -55.2 | NC_006146.1 | + | 117578 | 0.66 | 0.950657 |
Target: 5'- gGCCGCCGGGccuccUCGGgcUCGGAcuccgGCcaGGGa -3' miRNA: 3'- gCGGCGGUCU-----AGUU--AGCCUa----CGa-CCC- -5' |
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28909 | 5' | -55.2 | NC_006146.1 | + | 33183 | 0.66 | 0.954641 |
Target: 5'- gCGCCGCCGcucGGUCcugggccucCGGGUGCUccuggugcuccGGGg -3' miRNA: 3'- -GCGGCGGU---CUAGuua------GCCUACGA-----------CCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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