Results 1 - 20 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28909 | 5' | -55.2 | NC_006146.1 | + | 17571 | 1.1 | 0.003678 |
Target: 5'- gCGCCGCCAGAUCAAUCGGAUGCUGGGc -3' miRNA: 3'- -GCGGCGGUCUAGUUAGCCUACGACCC- -5' |
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28909 | 5' | -55.2 | NC_006146.1 | + | 128191 | 0.75 | 0.501958 |
Target: 5'- gGCUGCCAGccCGAgCGGgcGCUGGGg -3' miRNA: 3'- gCGGCGGUCuaGUUaGCCuaCGACCC- -5' |
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28909 | 5' | -55.2 | NC_006146.1 | + | 43526 | 0.73 | 0.661751 |
Target: 5'- gGCUGCCGGccaccAUCAGUgGGGUGUccgUGGGu -3' miRNA: 3'- gCGGCGGUC-----UAGUUAgCCUACG---ACCC- -5' |
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28909 | 5' | -55.2 | NC_006146.1 | + | 72555 | 0.72 | 0.671855 |
Target: 5'- aGCCGCCAauGggCGccggCGuGGUGCUGGGg -3' miRNA: 3'- gCGGCGGU--CuaGUua--GC-CUACGACCC- -5' |
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28909 | 5' | -55.2 | NC_006146.1 | + | 51106 | 0.72 | 0.681927 |
Target: 5'- gCGCUGCCGGAUUGA---GAUGUUGGGc -3' miRNA: 3'- -GCGGCGGUCUAGUUagcCUACGACCC- -5' |
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28909 | 5' | -55.2 | NC_006146.1 | + | 142693 | 0.7 | 0.779892 |
Target: 5'- gGCCGCCGGAgggcucuaacccgucUCuGUccacuagaggggacCGGGUGUUGGGa -3' miRNA: 3'- gCGGCGGUCU---------------AGuUA--------------GCCUACGACCC- -5' |
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28909 | 5' | -55.2 | NC_006146.1 | + | 28272 | 0.7 | 0.814669 |
Target: 5'- gGCagGCCGGGUC--UCGGGU-CUGGGg -3' miRNA: 3'- gCGg-CGGUCUAGuuAGCCUAcGACCC- -5' |
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28909 | 5' | -55.2 | NC_006146.1 | + | 25194 | 0.7 | 0.814669 |
Target: 5'- gGCagGCCGGGUC--UCGGGU-CUGGGg -3' miRNA: 3'- gCGg-CGGUCUAGuuAGCCUAcGACCC- -5' |
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28909 | 5' | -55.2 | NC_006146.1 | + | 22116 | 0.7 | 0.814669 |
Target: 5'- gGCagGCCGGGUC--UCGGGU-CUGGGg -3' miRNA: 3'- gCGg-CGGUCUAGuuAGCCUAcGACCC- -5' |
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28909 | 5' | -55.2 | NC_006146.1 | + | 19038 | 0.7 | 0.814669 |
Target: 5'- gGCagGCCGGGUC--UCGGGU-CUGGGg -3' miRNA: 3'- gCGg-CGGUCUAGuuAGCCUAcGACCC- -5' |
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28909 | 5' | -55.2 | NC_006146.1 | + | 12883 | 0.7 | 0.814669 |
Target: 5'- gGCagGCCGGGUC--UCGGGU-CUGGGg -3' miRNA: 3'- gCGg-CGGUCUAGuuAGCCUAcGACCC- -5' |
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28909 | 5' | -55.2 | NC_006146.1 | + | 148848 | 0.7 | 0.818104 |
Target: 5'- gGCCGCCGGAgggcucuaacccugUCucuGUccacuagaggggacCGGGUGUUGGGa -3' miRNA: 3'- gCGGCGGUCU--------------AGu--UA--------------GCCUACGACCC- -5' |
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28909 | 5' | -55.2 | NC_006146.1 | + | 151926 | 0.7 | 0.818104 |
Target: 5'- gGCCGCCGGAgggcucuaacccugUCucuGUccacuagaggggacCGGGUGUUGGGa -3' miRNA: 3'- gCGGCGGUCU--------------AGu--UA--------------GCCUACGACCC- -5' |
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28909 | 5' | -55.2 | NC_006146.1 | + | 155004 | 0.7 | 0.818104 |
Target: 5'- gGCCGCCGGAgggcucuaacccugUCucuGUccacuagaggggacCGGGUGUUGGGa -3' miRNA: 3'- gCGGCGGUCU--------------AGu--UA--------------GCCUACGACCC- -5' |
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28909 | 5' | -55.2 | NC_006146.1 | + | 158083 | 0.7 | 0.818104 |
Target: 5'- gGCCGCCGGAgggcucuaacccugUCucuGUccacuagaggggacCGGGUGUUGGGa -3' miRNA: 3'- gCGGCGGUCU--------------AGu--UA--------------GCCUACGACCC- -5' |
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28909 | 5' | -55.2 | NC_006146.1 | + | 145770 | 0.7 | 0.818104 |
Target: 5'- gGCCGCCGGAgggcucuaacccugUCucuGUccacuagaggggacCGGGUGUUGGGa -3' miRNA: 3'- gCGGCGGUCU--------------AGu--UA--------------GCCUACGACCC- -5' |
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28909 | 5' | -55.2 | NC_006146.1 | + | 33307 | 0.69 | 0.823207 |
Target: 5'- gCGCCGCCGcucGGUCcuggggcuccggGGUcCGGGUGCUccGGGg -3' miRNA: 3'- -GCGGCGGU---CUAG------------UUA-GCCUACGA--CCC- -5' |
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28909 | 5' | -55.2 | NC_006146.1 | + | 23749 | 0.69 | 0.838951 |
Target: 5'- cCGCCGCCGGGUCAAcugccgCGGccgagaAUGgcggccugcgcguCUGGGg -3' miRNA: 3'- -GCGGCGGUCUAGUUa-----GCC------UAC-------------GACCC- -5' |
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28909 | 5' | -55.2 | NC_006146.1 | + | 81778 | 0.69 | 0.839761 |
Target: 5'- gGCCGCCcGGUCuccggGGGUGCcaccUGGGg -3' miRNA: 3'- gCGGCGGuCUAGuuag-CCUACG----ACCC- -5' |
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28909 | 5' | -55.2 | NC_006146.1 | + | 62491 | 0.69 | 0.862432 |
Target: 5'- gGCCGCCAcGUCAGaCGGAcagguguuuuuggUGCUgcccGGGg -3' miRNA: 3'- gCGGCGGUcUAGUUaGCCU-------------ACGA----CCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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