miRNA display CGI


Results 21 - 40 of 68 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28909 5' -55.2 NC_006146.1 + 67227 0.68 0.877786
Target:  5'- gGCCgGCCAGGcaCAGgaagccaCGGAgGCUGGGg -3'
miRNA:   3'- gCGG-CGGUCUa-GUUa------GCCUaCGACCC- -5'
28909 5' -55.2 NC_006146.1 + 57048 0.68 0.891526
Target:  5'- aGCCGCCAGGguuga-GGcgGgaGGGg -3'
miRNA:   3'- gCGGCGGUCUaguuagCCuaCgaCCC- -5'
28909 5' -55.2 NC_006146.1 + 135522 0.68 0.898062
Target:  5'- cCGCUGCCGGGUCcgcugcccGGUCcuGGA-GCUcGGGg -3'
miRNA:   3'- -GCGGCGGUCUAG--------UUAG--CCUaCGA-CCC- -5'
28909 5' -55.2 NC_006146.1 + 135429 0.68 0.898062
Target:  5'- cCGCUGCCGGGUCcgcugcccGGUCcuGGA-GCUcGGGg -3'
miRNA:   3'- -GCGGCGGUCUAG--------UUAG--CCUaCGA-CCC- -5'
28909 5' -55.2 NC_006146.1 + 135336 0.68 0.898062
Target:  5'- cCGCUGCCGGGUCcgcugcccGGUCcuGGA-GCUcGGGg -3'
miRNA:   3'- -GCGGCGGUCUAG--------UUAG--CCUaCGA-CCC- -5'
28909 5' -55.2 NC_006146.1 + 135243 0.68 0.898062
Target:  5'- cCGCUGCCGGGUCcgcugcccGGUCcuGGA-GCUcGGGg -3'
miRNA:   3'- -GCGGCGGUCUAG--------UUAG--CCUaCGA-CCC- -5'
28909 5' -55.2 NC_006146.1 + 135150 0.68 0.898062
Target:  5'- cCGCUGCCGGGUCcgcugcccGGUCcuGGA-GCUcGGGg -3'
miRNA:   3'- -GCGGCGGUCUAG--------UUAG--CCUaCGA-CCC- -5'
28909 5' -55.2 NC_006146.1 + 135615 0.68 0.898062
Target:  5'- cCGCUGCCGGGUCcgcugcccGGUCcuGGA-GCUcGGGg -3'
miRNA:   3'- -GCGGCGGUCUAG--------UUAG--CCUaCGA-CCC- -5'
28909 5' -55.2 NC_006146.1 + 136265 0.68 0.898062
Target:  5'- cCGCUGCCGGGUCcgcugcccGGUCcuGGA-GCUcGGGg -3'
miRNA:   3'- -GCGGCGGUCUAG--------UUAG--CCUaCGA-CCC- -5'
28909 5' -55.2 NC_006146.1 + 135893 0.68 0.898062
Target:  5'- cCGCUGCCGGGUCcgcugcccGGUCcuGGA-GCUcGGGg -3'
miRNA:   3'- -GCGGCGGUCUAG--------UUAG--CCUaCGA-CCC- -5'
28909 5' -55.2 NC_006146.1 + 136172 0.68 0.898062
Target:  5'- cCGCUGCCGGGUCcgcugcccGGUCcuGGA-GCUcGGGg -3'
miRNA:   3'- -GCGGCGGUCUAG--------UUAG--CCUaCGA-CCC- -5'
28909 5' -55.2 NC_006146.1 + 135986 0.68 0.898062
Target:  5'- cCGCUGCCGGGUCcgcugcccGGUCcuGGA-GCUcGGGg -3'
miRNA:   3'- -GCGGCGGUCUAG--------UUAG--CCUaCGA-CCC- -5'
28909 5' -55.2 NC_006146.1 + 136079 0.68 0.898062
Target:  5'- cCGCUGCCGGGUCcgcugcccGGUCcuGGA-GCUcGGGg -3'
miRNA:   3'- -GCGGCGGUCUAG--------UUAG--CCUaCGA-CCC- -5'
28909 5' -55.2 NC_006146.1 + 136358 0.68 0.898062
Target:  5'- cCGCUGCCGGGUCcgcugcccGGUCcuGGA-GCUcGGGg -3'
miRNA:   3'- -GCGGCGGUCUAG--------UUAG--CCUaCGA-CCC- -5'
28909 5' -55.2 NC_006146.1 + 136451 0.68 0.898062
Target:  5'- cCGCUGCCGGGUCcgcugcccGGUCcuGGA-GCUcGGGg -3'
miRNA:   3'- -GCGGCGGUCUAG--------UUAG--CCUaCGA-CCC- -5'
28909 5' -55.2 NC_006146.1 + 136544 0.68 0.898062
Target:  5'- cCGCUGCCGGGUCcgcugcccGGUCcuGGA-GCUcGGGg -3'
miRNA:   3'- -GCGGCGGUCUAG--------UUAG--CCUaCGA-CCC- -5'
28909 5' -55.2 NC_006146.1 + 136637 0.68 0.898062
Target:  5'- cCGCUGCCGGGUCcgcugcccGGUCcuGGA-GCUcGGGg -3'
miRNA:   3'- -GCGGCGGUCUAG--------UUAG--CCUaCGA-CCC- -5'
28909 5' -55.2 NC_006146.1 + 136729 0.68 0.898062
Target:  5'- cCGCUGCCGGGUCcgcugcccGGUCcuGGA-GCUcGGGg -3'
miRNA:   3'- -GCGGCGGUCUAG--------UUAG--CCUaCGA-CCC- -5'
28909 5' -55.2 NC_006146.1 + 21256 0.68 0.898062
Target:  5'- gCGCUGCCGGcgCGugcUCGaccuGGUGCUGGcGg -3'
miRNA:   3'- -GCGGCGGUCuaGUu--AGC----CUACGACC-C- -5'
28909 5' -55.2 NC_006146.1 + 135800 0.68 0.898062
Target:  5'- cCGCUGCCGGGUCcgcugcccGGUCcuGGA-GCUcGGGg -3'
miRNA:   3'- -GCGGCGGUCUAG--------UUAG--CCUaCGA-CCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.