Results 61 - 68 of 68 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28909 | 5' | -55.2 | NC_006146.1 | + | 25194 | 0.7 | 0.814669 |
Target: 5'- gGCagGCCGGGUC--UCGGGU-CUGGGg -3' miRNA: 3'- gCGg-CGGUCUAGuuAGCCUAcGACCC- -5' |
|||||||
28909 | 5' | -55.2 | NC_006146.1 | + | 28272 | 0.7 | 0.814669 |
Target: 5'- gGCagGCCGGGUC--UCGGGU-CUGGGg -3' miRNA: 3'- gCGg-CGGUCUAGuuAGCCUAcGACCC- -5' |
|||||||
28909 | 5' | -55.2 | NC_006146.1 | + | 142693 | 0.7 | 0.779892 |
Target: 5'- gGCCGCCGGAgggcucuaacccgucUCuGUccacuagaggggacCGGGUGUUGGGa -3' miRNA: 3'- gCGGCGGUCU---------------AGuUA--------------GCCUACGACCC- -5' |
|||||||
28909 | 5' | -55.2 | NC_006146.1 | + | 51106 | 0.72 | 0.681927 |
Target: 5'- gCGCUGCCGGAUUGA---GAUGUUGGGc -3' miRNA: 3'- -GCGGCGGUCUAGUUagcCUACGACCC- -5' |
|||||||
28909 | 5' | -55.2 | NC_006146.1 | + | 72555 | 0.72 | 0.671855 |
Target: 5'- aGCCGCCAauGggCGccggCGuGGUGCUGGGg -3' miRNA: 3'- gCGGCGGU--CuaGUua--GC-CUACGACCC- -5' |
|||||||
28909 | 5' | -55.2 | NC_006146.1 | + | 43526 | 0.73 | 0.661751 |
Target: 5'- gGCUGCCGGccaccAUCAGUgGGGUGUccgUGGGu -3' miRNA: 3'- gCGGCGGUC-----UAGUUAgCCUACG---ACCC- -5' |
|||||||
28909 | 5' | -55.2 | NC_006146.1 | + | 128191 | 0.75 | 0.501958 |
Target: 5'- gGCUGCCAGccCGAgCGGgcGCUGGGg -3' miRNA: 3'- gCGGCGGUCuaGUUaGCCuaCGACCC- -5' |
|||||||
28909 | 5' | -55.2 | NC_006146.1 | + | 17571 | 1.1 | 0.003678 |
Target: 5'- gCGCCGCCAGAUCAAUCGGAUGCUGGGc -3' miRNA: 3'- -GCGGCGGUCUAGUUAGCCUACGACCC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home