miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28909 5' -55.2 NC_006146.1 + 12883 0.7 0.814669
Target:  5'- gGCagGCCGGGUC--UCGGGU-CUGGGg -3'
miRNA:   3'- gCGg-CGGUCUAGuuAGCCUAcGACCC- -5'
28909 5' -55.2 NC_006146.1 + 13987 0.66 0.942006
Target:  5'- gCGCCGCCacccAGGccUCGGcCGGGcuggUGCUGGa -3'
miRNA:   3'- -GCGGCGG----UCU--AGUUaGCCU----ACGACCc -5'
28909 5' -55.2 NC_006146.1 + 17571 1.1 0.003678
Target:  5'- gCGCCGCCAGAUCAAUCGGAUGCUGGGc -3'
miRNA:   3'- -GCGGCGGUCUAGUUAGCCUACGACCC- -5'
28909 5' -55.2 NC_006146.1 + 18858 0.67 0.927284
Target:  5'- gCGCUGCCGGGgugg-UGGAcgUGCgGGGg -3'
miRNA:   3'- -GCGGCGGUCUaguuaGCCU--ACGaCCC- -5'
28909 5' -55.2 NC_006146.1 + 19038 0.7 0.814669
Target:  5'- gGCagGCCGGGUC--UCGGGU-CUGGGg -3'
miRNA:   3'- gCGg-CGGUCUAGuuAGCCUAcGACCC- -5'
28909 5' -55.2 NC_006146.1 + 21256 0.68 0.898062
Target:  5'- gCGCUGCCGGcgCGugcUCGaccuGGUGCUGGcGg -3'
miRNA:   3'- -GCGGCGGUCuaGUu--AGC----CUACGACC-C- -5'
28909 5' -55.2 NC_006146.1 + 22116 0.7 0.814669
Target:  5'- gGCagGCCGGGUC--UCGGGU-CUGGGg -3'
miRNA:   3'- gCGg-CGGUCUAGuuAGCCUAcGACCC- -5'
28909 5' -55.2 NC_006146.1 + 23749 0.69 0.838951
Target:  5'- cCGCCGCCGGGUCAAcugccgCGGccgagaAUGgcggccugcgcguCUGGGg -3'
miRNA:   3'- -GCGGCGGUCUAGUUa-----GCC------UAC-------------GACCC- -5'
28909 5' -55.2 NC_006146.1 + 25194 0.7 0.814669
Target:  5'- gGCagGCCGGGUC--UCGGGU-CUGGGg -3'
miRNA:   3'- gCGg-CGGUCUAGuuAGCCUAcGACCC- -5'
28909 5' -55.2 NC_006146.1 + 28272 0.7 0.814669
Target:  5'- gGCagGCCGGGUC--UCGGGU-CUGGGg -3'
miRNA:   3'- gCGg-CGGUCUAGuuAGCCUAcGACCC- -5'
28909 5' -55.2 NC_006146.1 + 32125 0.67 0.916295
Target:  5'- gGgUGCCAcGUCAccccgGGGUGCUGGGg -3'
miRNA:   3'- gCgGCGGUcUAGUuag--CCUACGACCC- -5'
28909 5' -55.2 NC_006146.1 + 33183 0.66 0.954641
Target:  5'- gCGCCGCCGcucGGUCcugggccucCGGGUGCUccuggugcuccGGGg -3'
miRNA:   3'- -GCGGCGGU---CUAGuua------GCCUACGA-----------CCC- -5'
28909 5' -55.2 NC_006146.1 + 33307 0.69 0.823207
Target:  5'- gCGCCGCCGcucGGUCcuggggcuccggGGUcCGGGUGCUccGGGg -3'
miRNA:   3'- -GCGGCGGU---CUAG------------UUA-GCCUACGA--CCC- -5'
28909 5' -55.2 NC_006146.1 + 43526 0.73 0.661751
Target:  5'- gGCUGCCGGccaccAUCAGUgGGGUGUccgUGGGu -3'
miRNA:   3'- gCGGCGGUC-----UAGUUAgCCUACG---ACCC- -5'
28909 5' -55.2 NC_006146.1 + 49841 0.67 0.933426
Target:  5'- uGCCGCaggcgggucaggAGGUCGucaaaguccaucaccGUCGGGagGCUGGGg -3'
miRNA:   3'- gCGGCGg-----------UCUAGU---------------UAGCCUa-CGACCC- -5'
28909 5' -55.2 NC_006146.1 + 50002 0.66 0.946446
Target:  5'- gGCCGUCGGAggCGAUCcgguuGAUGCagccGGGg -3'
miRNA:   3'- gCGGCGGUCUa-GUUAGc----CUACGa---CCC- -5'
28909 5' -55.2 NC_006146.1 + 51106 0.72 0.681927
Target:  5'- gCGCUGCCGGAUUGA---GAUGUUGGGc -3'
miRNA:   3'- -GCGGCGGUCUAGUUagcCUACGACCC- -5'
28909 5' -55.2 NC_006146.1 + 57048 0.68 0.891526
Target:  5'- aGCCGCCAGGguuga-GGcgGgaGGGg -3'
miRNA:   3'- gCGGCGGUCUaguuagCCuaCgaCCC- -5'
28909 5' -55.2 NC_006146.1 + 62491 0.69 0.862432
Target:  5'- gGCCGCCAcGUCAGaCGGAcagguguuuuuggUGCUgcccGGGg -3'
miRNA:   3'- gCGGCGGUcUAGUUaGCCU-------------ACGA----CCC- -5'
28909 5' -55.2 NC_006146.1 + 67227 0.68 0.877786
Target:  5'- gGCCgGCCAGGcaCAGgaagccaCGGAgGCUGGGg -3'
miRNA:   3'- gCGG-CGGUCUa-GUUa------GCCUaCGACCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.