Results 21 - 40 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28909 | 5' | -55.2 | NC_006146.1 | + | 136544 | 0.68 | 0.898062 |
Target: 5'- cCGCUGCCGGGUCcgcugcccGGUCcuGGA-GCUcGGGg -3' miRNA: 3'- -GCGGCGGUCUAG--------UUAG--CCUaCGA-CCC- -5' |
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28909 | 5' | -55.2 | NC_006146.1 | + | 136451 | 0.68 | 0.898062 |
Target: 5'- cCGCUGCCGGGUCcgcugcccGGUCcuGGA-GCUcGGGg -3' miRNA: 3'- -GCGGCGGUCUAG--------UUAG--CCUaCGA-CCC- -5' |
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28909 | 5' | -55.2 | NC_006146.1 | + | 136358 | 0.68 | 0.898062 |
Target: 5'- cCGCUGCCGGGUCcgcugcccGGUCcuGGA-GCUcGGGg -3' miRNA: 3'- -GCGGCGGUCUAG--------UUAG--CCUaCGA-CCC- -5' |
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28909 | 5' | -55.2 | NC_006146.1 | + | 136265 | 0.68 | 0.898062 |
Target: 5'- cCGCUGCCGGGUCcgcugcccGGUCcuGGA-GCUcGGGg -3' miRNA: 3'- -GCGGCGGUCUAG--------UUAG--CCUaCGA-CCC- -5' |
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28909 | 5' | -55.2 | NC_006146.1 | + | 136172 | 0.68 | 0.898062 |
Target: 5'- cCGCUGCCGGGUCcgcugcccGGUCcuGGA-GCUcGGGg -3' miRNA: 3'- -GCGGCGGUCUAG--------UUAG--CCUaCGA-CCC- -5' |
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28909 | 5' | -55.2 | NC_006146.1 | + | 136079 | 0.68 | 0.898062 |
Target: 5'- cCGCUGCCGGGUCcgcugcccGGUCcuGGA-GCUcGGGg -3' miRNA: 3'- -GCGGCGGUCUAG--------UUAG--CCUaCGA-CCC- -5' |
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28909 | 5' | -55.2 | NC_006146.1 | + | 135986 | 0.68 | 0.898062 |
Target: 5'- cCGCUGCCGGGUCcgcugcccGGUCcuGGA-GCUcGGGg -3' miRNA: 3'- -GCGGCGGUCUAG--------UUAG--CCUaCGA-CCC- -5' |
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28909 | 5' | -55.2 | NC_006146.1 | + | 135955 | 0.67 | 0.916295 |
Target: 5'- gGgUGCCAcGUCAccccgGGGUGCUGGGg -3' miRNA: 3'- gCgGCGGUcUAGUuag--CCUACGACCC- -5' |
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28909 | 5' | -55.2 | NC_006146.1 | + | 135893 | 0.68 | 0.898062 |
Target: 5'- cCGCUGCCGGGUCcgcugcccGGUCcuGGA-GCUcGGGg -3' miRNA: 3'- -GCGGCGGUCUAG--------UUAG--CCUaCGA-CCC- -5' |
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28909 | 5' | -55.2 | NC_006146.1 | + | 135800 | 0.68 | 0.898062 |
Target: 5'- cCGCUGCCGGGUCcgcugcccGGUCcuGGA-GCUcGGGg -3' miRNA: 3'- -GCGGCGGUCUAG--------UUAG--CCUaCGA-CCC- -5' |
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28909 | 5' | -55.2 | NC_006146.1 | + | 135708 | 0.67 | 0.920248 |
Target: 5'- cCGCUGCCGGGUCcgcugcccguccugGAgcUCGGG-GCcGGGg -3' miRNA: 3'- -GCGGCGGUCUAG--------------UU--AGCCUaCGaCCC- -5' |
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28909 | 5' | -55.2 | NC_006146.1 | + | 135615 | 0.68 | 0.898062 |
Target: 5'- cCGCUGCCGGGUCcgcugcccGGUCcuGGA-GCUcGGGg -3' miRNA: 3'- -GCGGCGGUCUAG--------UUAG--CCUaCGA-CCC- -5' |
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28909 | 5' | -55.2 | NC_006146.1 | + | 135522 | 0.68 | 0.898062 |
Target: 5'- cCGCUGCCGGGUCcgcugcccGGUCcuGGA-GCUcGGGg -3' miRNA: 3'- -GCGGCGGUCUAG--------UUAG--CCUaCGA-CCC- -5' |
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28909 | 5' | -55.2 | NC_006146.1 | + | 135429 | 0.68 | 0.898062 |
Target: 5'- cCGCUGCCGGGUCcgcugcccGGUCcuGGA-GCUcGGGg -3' miRNA: 3'- -GCGGCGGUCUAG--------UUAG--CCUaCGA-CCC- -5' |
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28909 | 5' | -55.2 | NC_006146.1 | + | 135336 | 0.68 | 0.898062 |
Target: 5'- cCGCUGCCGGGUCcgcugcccGGUCcuGGA-GCUcGGGg -3' miRNA: 3'- -GCGGCGGUCUAG--------UUAG--CCUaCGA-CCC- -5' |
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28909 | 5' | -55.2 | NC_006146.1 | + | 135243 | 0.68 | 0.898062 |
Target: 5'- cCGCUGCCGGGUCcgcugcccGGUCcuGGA-GCUcGGGg -3' miRNA: 3'- -GCGGCGGUCUAG--------UUAG--CCUaCGA-CCC- -5' |
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28909 | 5' | -55.2 | NC_006146.1 | + | 135150 | 0.68 | 0.898062 |
Target: 5'- cCGCUGCCGGGUCcgcugcccGGUCcuGGA-GCUcGGGg -3' miRNA: 3'- -GCGGCGGUCUAG--------UUAG--CCUaCGA-CCC- -5' |
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28909 | 5' | -55.2 | NC_006146.1 | + | 129624 | 0.67 | 0.916295 |
Target: 5'- cCGUCGCCGGGUCcuccgCGGGcgcgUGCUccgcccGGGa -3' miRNA: 3'- -GCGGCGGUCUAGuua--GCCU----ACGA------CCC- -5' |
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28909 | 5' | -55.2 | NC_006146.1 | + | 128191 | 0.75 | 0.501958 |
Target: 5'- gGCUGCCAGccCGAgCGGgcGCUGGGg -3' miRNA: 3'- gCGGCGGUCuaGUUaGCCuaCGACCC- -5' |
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28909 | 5' | -55.2 | NC_006146.1 | + | 122388 | 0.66 | 0.946446 |
Target: 5'- gGCgGCCAGGa-AcgCGGAggUGCUGGa -3' miRNA: 3'- gCGgCGGUCUagUuaGCCU--ACGACCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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