Results 61 - 68 of 68 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 28909 | 5' | -55.2 | NC_006146.1 | + | 23749 | 0.69 | 0.838951 |
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Target: 5'- cCGCCGCCGGGUCAAcugccgCGGccgagaAUGgcggccugcgcguCUGGGg -3' miRNA: 3'- -GCGGCGGUCUAGUUa-----GCC------UAC-------------GACCC- -5' |
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| 28909 | 5' | -55.2 | NC_006146.1 | + | 22116 | 0.7 | 0.814669 |
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Target: 5'- gGCagGCCGGGUC--UCGGGU-CUGGGg -3' miRNA: 3'- gCGg-CGGUCUAGuuAGCCUAcGACCC- -5' |
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| 28909 | 5' | -55.2 | NC_006146.1 | + | 21256 | 0.68 | 0.898062 |
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Target: 5'- gCGCUGCCGGcgCGugcUCGaccuGGUGCUGGcGg -3' miRNA: 3'- -GCGGCGGUCuaGUu--AGC----CUACGACC-C- -5' |
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| 28909 | 5' | -55.2 | NC_006146.1 | + | 19038 | 0.7 | 0.814669 |
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Target: 5'- gGCagGCCGGGUC--UCGGGU-CUGGGg -3' miRNA: 3'- gCGg-CGGUCUAGuuAGCCUAcGACCC- -5' |
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| 28909 | 5' | -55.2 | NC_006146.1 | + | 18858 | 0.67 | 0.927284 |
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Target: 5'- gCGCUGCCGGGgugg-UGGAcgUGCgGGGg -3' miRNA: 3'- -GCGGCGGUCUaguuaGCCU--ACGaCCC- -5' |
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| 28909 | 5' | -55.2 | NC_006146.1 | + | 17571 | 1.1 | 0.003678 |
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Target: 5'- gCGCCGCCAGAUCAAUCGGAUGCUGGGc -3' miRNA: 3'- -GCGGCGGUCUAGUUAGCCUACGACCC- -5' |
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| 28909 | 5' | -55.2 | NC_006146.1 | + | 13987 | 0.66 | 0.942006 |
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Target: 5'- gCGCCGCCacccAGGccUCGGcCGGGcuggUGCUGGa -3' miRNA: 3'- -GCGGCGG----UCU--AGUUaGCCU----ACGACCc -5' |
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| 28909 | 5' | -55.2 | NC_006146.1 | + | 12883 | 0.7 | 0.814669 |
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Target: 5'- gGCagGCCGGGUC--UCGGGU-CUGGGg -3' miRNA: 3'- gCGg-CGGUCUAGuuAGCCUAcGACCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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