Results 1 - 20 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28909 | 5' | -55.2 | NC_006146.1 | + | 72555 | 0.72 | 0.671855 |
Target: 5'- aGCCGCCAauGggCGccggCGuGGUGCUGGGg -3' miRNA: 3'- gCGGCGGU--CuaGUua--GC-CUACGACCC- -5' |
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28909 | 5' | -55.2 | NC_006146.1 | + | 135986 | 0.68 | 0.898062 |
Target: 5'- cCGCUGCCGGGUCcgcugcccGGUCcuGGA-GCUcGGGg -3' miRNA: 3'- -GCGGCGGUCUAG--------UUAG--CCUaCGA-CCC- -5' |
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28909 | 5' | -55.2 | NC_006146.1 | + | 136172 | 0.68 | 0.898062 |
Target: 5'- cCGCUGCCGGGUCcgcugcccGGUCcuGGA-GCUcGGGg -3' miRNA: 3'- -GCGGCGGUCUAG--------UUAG--CCUaCGA-CCC- -5' |
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28909 | 5' | -55.2 | NC_006146.1 | + | 33183 | 0.66 | 0.954641 |
Target: 5'- gCGCCGCCGcucGGUCcugggccucCGGGUGCUccuggugcuccGGGg -3' miRNA: 3'- -GCGGCGGU---CUAGuua------GCCUACGA-----------CCC- -5' |
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28909 | 5' | -55.2 | NC_006146.1 | + | 25194 | 0.7 | 0.814669 |
Target: 5'- gGCagGCCGGGUC--UCGGGU-CUGGGg -3' miRNA: 3'- gCGg-CGGUCUAGuuAGCCUAcGACCC- -5' |
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28909 | 5' | -55.2 | NC_006146.1 | + | 28272 | 0.7 | 0.814669 |
Target: 5'- gGCagGCCGGGUC--UCGGGU-CUGGGg -3' miRNA: 3'- gCGg-CGGUCUAGuuAGCCUAcGACCC- -5' |
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28909 | 5' | -55.2 | NC_006146.1 | + | 67227 | 0.68 | 0.877786 |
Target: 5'- gGCCgGCCAGGcaCAGgaagccaCGGAgGCUGGGg -3' miRNA: 3'- gCGG-CGGUCUa-GUUa------GCCUaCGACCC- -5' |
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28909 | 5' | -55.2 | NC_006146.1 | + | 57048 | 0.68 | 0.891526 |
Target: 5'- aGCCGCCAGGguuga-GGcgGgaGGGg -3' miRNA: 3'- gCGGCGGUCUaguuagCCuaCgaCCC- -5' |
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28909 | 5' | -55.2 | NC_006146.1 | + | 135336 | 0.68 | 0.898062 |
Target: 5'- cCGCUGCCGGGUCcgcugcccGGUCcuGGA-GCUcGGGg -3' miRNA: 3'- -GCGGCGGUCUAG--------UUAG--CCUaCGA-CCC- -5' |
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28909 | 5' | -55.2 | NC_006146.1 | + | 135893 | 0.68 | 0.898062 |
Target: 5'- cCGCUGCCGGGUCcgcugcccGGUCcuGGA-GCUcGGGg -3' miRNA: 3'- -GCGGCGGUCUAG--------UUAG--CCUaCGA-CCC- -5' |
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28909 | 5' | -55.2 | NC_006146.1 | + | 135522 | 0.68 | 0.898062 |
Target: 5'- cCGCUGCCGGGUCcgcugcccGGUCcuGGA-GCUcGGGg -3' miRNA: 3'- -GCGGCGGUCUAG--------UUAG--CCUaCGA-CCC- -5' |
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28909 | 5' | -55.2 | NC_006146.1 | + | 135243 | 0.68 | 0.898062 |
Target: 5'- cCGCUGCCGGGUCcgcugcccGGUCcuGGA-GCUcGGGg -3' miRNA: 3'- -GCGGCGGUCUAG--------UUAG--CCUaCGA-CCC- -5' |
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28909 | 5' | -55.2 | NC_006146.1 | + | 12883 | 0.7 | 0.814669 |
Target: 5'- gGCagGCCGGGUC--UCGGGU-CUGGGg -3' miRNA: 3'- gCGg-CGGUCUAGuuAGCCUAcGACCC- -5' |
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28909 | 5' | -55.2 | NC_006146.1 | + | 135615 | 0.68 | 0.898062 |
Target: 5'- cCGCUGCCGGGUCcgcugcccGGUCcuGGA-GCUcGGGg -3' miRNA: 3'- -GCGGCGGUCUAG--------UUAG--CCUaCGA-CCC- -5' |
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28909 | 5' | -55.2 | NC_006146.1 | + | 19038 | 0.7 | 0.814669 |
Target: 5'- gGCagGCCGGGUC--UCGGGU-CUGGGg -3' miRNA: 3'- gCGg-CGGUCUAGuuAGCCUAcGACCC- -5' |
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28909 | 5' | -55.2 | NC_006146.1 | + | 135150 | 0.68 | 0.898062 |
Target: 5'- cCGCUGCCGGGUCcgcugcccGGUCcuGGA-GCUcGGGg -3' miRNA: 3'- -GCGGCGGUCUAG--------UUAG--CCUaCGA-CCC- -5' |
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28909 | 5' | -55.2 | NC_006146.1 | + | 135800 | 0.68 | 0.898062 |
Target: 5'- cCGCUGCCGGGUCcgcugcccGGUCcuGGA-GCUcGGGg -3' miRNA: 3'- -GCGGCGGUCUAG--------UUAG--CCUaCGA-CCC- -5' |
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28909 | 5' | -55.2 | NC_006146.1 | + | 136079 | 0.68 | 0.898062 |
Target: 5'- cCGCUGCCGGGUCcgcugcccGGUCcuGGA-GCUcGGGg -3' miRNA: 3'- -GCGGCGGUCUAG--------UUAG--CCUaCGA-CCC- -5' |
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28909 | 5' | -55.2 | NC_006146.1 | + | 22116 | 0.7 | 0.814669 |
Target: 5'- gGCagGCCGGGUC--UCGGGU-CUGGGg -3' miRNA: 3'- gCGg-CGGUCUAGuuAGCCUAcGACCC- -5' |
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28909 | 5' | -55.2 | NC_006146.1 | + | 33307 | 0.69 | 0.823207 |
Target: 5'- gCGCCGCCGcucGGUCcuggggcuccggGGUcCGGGUGCUccGGGg -3' miRNA: 3'- -GCGGCGGU---CUAG------------UUA-GCCUACGA--CCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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