miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28909 5' -55.2 NC_006146.1 + 136915 0.68 0.898062
Target:  5'- cCGCUGCCGGGUCcgcugcccGGUCcuGGA-GCUcGGGg -3'
miRNA:   3'- -GCGGCGGUCUAG--------UUAG--CCUaCGA-CCC- -5'
28909 5' -55.2 NC_006146.1 + 136822 0.68 0.898062
Target:  5'- cCGCUGCCGGGUCcgcugcccGGUCcuGGA-GCUcGGGg -3'
miRNA:   3'- -GCGGCGGUCUAG--------UUAG--CCUaCGA-CCC- -5'
28909 5' -55.2 NC_006146.1 + 136358 0.68 0.898062
Target:  5'- cCGCUGCCGGGUCcgcugcccGGUCcuGGA-GCUcGGGg -3'
miRNA:   3'- -GCGGCGGUCUAG--------UUAG--CCUaCGA-CCC- -5'
28909 5' -55.2 NC_006146.1 + 136079 0.68 0.898062
Target:  5'- cCGCUGCCGGGUCcgcugcccGGUCcuGGA-GCUcGGGg -3'
miRNA:   3'- -GCGGCGGUCUAG--------UUAG--CCUaCGA-CCC- -5'
28909 5' -55.2 NC_006146.1 + 49841 0.67 0.933426
Target:  5'- uGCCGCaggcgggucaggAGGUCGucaaaguccaucaccGUCGGGagGCUGGGg -3'
miRNA:   3'- gCGGCGg-----------UCUAGU---------------UAGCCUa-CGACCC- -5'
28909 5' -55.2 NC_006146.1 + 137380 0.68 0.898062
Target:  5'- cCGCUGCCGGGUCcgcugcccGGUCcuGGA-GCUcGGGg -3'
miRNA:   3'- -GCGGCGGUCUAG--------UUAG--CCUaCGA-CCC- -5'
28909 5' -55.2 NC_006146.1 + 136637 0.68 0.898062
Target:  5'- cCGCUGCCGGGUCcgcugcccGGUCcuGGA-GCUcGGGg -3'
miRNA:   3'- -GCGGCGGUCUAG--------UUAG--CCUaCGA-CCC- -5'
28909 5' -55.2 NC_006146.1 + 135986 0.68 0.898062
Target:  5'- cCGCUGCCGGGUCcgcugcccGGUCcuGGA-GCUcGGGg -3'
miRNA:   3'- -GCGGCGGUCUAG--------UUAG--CCUaCGA-CCC- -5'
28909 5' -55.2 NC_006146.1 + 137287 0.68 0.898062
Target:  5'- cCGCUGCCGGGUCcgcugcccGGUCcuGGA-GCUcGGGg -3'
miRNA:   3'- -GCGGCGGUCUAG--------UUAG--CCUaCGA-CCC- -5'
28909 5' -55.2 NC_006146.1 + 135893 0.68 0.898062
Target:  5'- cCGCUGCCGGGUCcgcugcccGGUCcuGGA-GCUcGGGg -3'
miRNA:   3'- -GCGGCGGUCUAG--------UUAG--CCUaCGA-CCC- -5'
28909 5' -55.2 NC_006146.1 + 136729 0.68 0.898062
Target:  5'- cCGCUGCCGGGUCcgcugcccGGUCcuGGA-GCUcGGGg -3'
miRNA:   3'- -GCGGCGGUCUAG--------UUAG--CCUaCGA-CCC- -5'
28909 5' -55.2 NC_006146.1 + 137008 0.68 0.898062
Target:  5'- cCGCUGCCGGGUCcgcugcccGGUCcuGGA-GCUcGGGg -3'
miRNA:   3'- -GCGGCGGUCUAG--------UUAG--CCUaCGA-CCC- -5'
28909 5' -55.2 NC_006146.1 + 136544 0.68 0.898062
Target:  5'- cCGCUGCCGGGUCcgcugcccGGUCcuGGA-GCUcGGGg -3'
miRNA:   3'- -GCGGCGGUCUAG--------UUAG--CCUaCGA-CCC- -5'
28909 5' -55.2 NC_006146.1 + 136451 0.68 0.898062
Target:  5'- cCGCUGCCGGGUCcgcugcccGGUCcuGGA-GCUcGGGg -3'
miRNA:   3'- -GCGGCGGUCUAG--------UUAG--CCUaCGA-CCC- -5'
28909 5' -55.2 NC_006146.1 + 136265 0.68 0.898062
Target:  5'- cCGCUGCCGGGUCcgcugcccGGUCcuGGA-GCUcGGGg -3'
miRNA:   3'- -GCGGCGGUCUAG--------UUAG--CCUaCGA-CCC- -5'
28909 5' -55.2 NC_006146.1 + 136172 0.68 0.898062
Target:  5'- cCGCUGCCGGGUCcgcugcccGGUCcuGGA-GCUcGGGg -3'
miRNA:   3'- -GCGGCGGUCUAG--------UUAG--CCUaCGA-CCC- -5'
28909 5' -55.2 NC_006146.1 + 33183 0.66 0.954641
Target:  5'- gCGCCGCCGcucGGUCcugggccucCGGGUGCUccuggugcuccGGGg -3'
miRNA:   3'- -GCGGCGGU---CUAGuua------GCCUACGA-----------CCC- -5'
28909 5' -55.2 NC_006146.1 + 137566 0.66 0.946446
Target:  5'- cCGCUGCCGGGUCcgcugcccGGUCcuGGA-GCUcGGGc -3'
miRNA:   3'- -GCGGCGGUCUAG--------UUAG--CCUaCGA-CCC- -5'
28909 5' -55.2 NC_006146.1 + 154657 0.67 0.927284
Target:  5'- uGCCGCCGGcugCAccgugguggCGGGgggcgcugcUGCUGGGu -3'
miRNA:   3'- gCGGCGGUCua-GUua-------GCCU---------ACGACCC- -5'
28909 5' -55.2 NC_006146.1 + 137473 0.68 0.898062
Target:  5'- cCGCUGCCGGGUCcgcugcccGGUCcuGGA-GCUcGGGg -3'
miRNA:   3'- -GCGGCGGUCUAG--------UUAG--CCUaCGA-CCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.