miRNA display CGI


Results 61 - 68 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28909 5' -55.2 NC_006146.1 + 145770 0.7 0.818104
Target:  5'- gGCCGCCGGAgggcucuaacccugUCucuGUccacuagaggggacCGGGUGUUGGGa -3'
miRNA:   3'- gCGGCGGUCU--------------AGu--UA--------------GCCUACGACCC- -5'
28909 5' -55.2 NC_006146.1 + 148848 0.7 0.818104
Target:  5'- gGCCGCCGGAgggcucuaacccugUCucuGUccacuagaggggacCGGGUGUUGGGa -3'
miRNA:   3'- gCGGCGGUCU--------------AGu--UA--------------GCCUACGACCC- -5'
28909 5' -55.2 NC_006146.1 + 151926 0.7 0.818104
Target:  5'- gGCCGCCGGAgggcucuaacccugUCucuGUccacuagaggggacCGGGUGUUGGGa -3'
miRNA:   3'- gCGGCGGUCU--------------AGu--UA--------------GCCUACGACCC- -5'
28909 5' -55.2 NC_006146.1 + 155004 0.7 0.818104
Target:  5'- gGCCGCCGGAgggcucuaacccugUCucuGUccacuagaggggacCGGGUGUUGGGa -3'
miRNA:   3'- gCGGCGGUCU--------------AGu--UA--------------GCCUACGACCC- -5'
28909 5' -55.2 NC_006146.1 + 158083 0.7 0.818104
Target:  5'- gGCCGCCGGAgggcucuaacccugUCucuGUccacuagaggggacCGGGUGUUGGGa -3'
miRNA:   3'- gCGGCGGUCU--------------AGu--UA--------------GCCUACGACCC- -5'
28909 5' -55.2 NC_006146.1 + 23749 0.69 0.838951
Target:  5'- cCGCCGCCGGGUCAAcugccgCGGccgagaAUGgcggccugcgcguCUGGGg -3'
miRNA:   3'- -GCGGCGGUCUAGUUa-----GCC------UAC-------------GACCC- -5'
28909 5' -55.2 NC_006146.1 + 81778 0.69 0.839761
Target:  5'- gGCCGCCcGGUCuccggGGGUGCcaccUGGGg -3'
miRNA:   3'- gCGGCGGuCUAGuuag-CCUACG----ACCC- -5'
28909 5' -55.2 NC_006146.1 + 117578 0.66 0.950657
Target:  5'- gGCCGCCGGGccuccUCGGgcUCGGAcuccgGCcaGGGa -3'
miRNA:   3'- gCGGCGGUCU-----AGUU--AGCCUa----CGa-CCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.