Results 1 - 20 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28909 | 5' | -55.2 | NC_006146.1 | + | 145770 | 0.7 | 0.818104 |
Target: 5'- gGCCGCCGGAgggcucuaacccugUCucuGUccacuagaggggacCGGGUGUUGGGa -3' miRNA: 3'- gCGGCGGUCU--------------AGu--UA--------------GCCUACGACCC- -5' |
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28909 | 5' | -55.2 | NC_006146.1 | + | 21256 | 0.68 | 0.898062 |
Target: 5'- gCGCUGCCGGcgCGugcUCGaccuGGUGCUGGcGg -3' miRNA: 3'- -GCGGCGGUCuaGUu--AGC----CUACGACC-C- -5' |
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28909 | 5' | -55.2 | NC_006146.1 | + | 62491 | 0.69 | 0.862432 |
Target: 5'- gGCCGCCAcGUCAGaCGGAcagguguuuuuggUGCUgcccGGGg -3' miRNA: 3'- gCGGCGGUcUAGUUaGCCU-------------ACGA----CCC- -5' |
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28909 | 5' | -55.2 | NC_006146.1 | + | 81778 | 0.69 | 0.839761 |
Target: 5'- gGCCGCCcGGUCuccggGGGUGCcaccUGGGg -3' miRNA: 3'- gCGGCGGuCUAGuuag-CCUACG----ACCC- -5' |
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28909 | 5' | -55.2 | NC_006146.1 | + | 23749 | 0.69 | 0.838951 |
Target: 5'- cCGCCGCCGGGUCAAcugccgCGGccgagaAUGgcggccugcgcguCUGGGg -3' miRNA: 3'- -GCGGCGGUCUAGUUa-----GCC------UAC-------------GACCC- -5' |
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28909 | 5' | -55.2 | NC_006146.1 | + | 158083 | 0.7 | 0.818104 |
Target: 5'- gGCCGCCGGAgggcucuaacccugUCucuGUccacuagaggggacCGGGUGUUGGGa -3' miRNA: 3'- gCGGCGGUCU--------------AGu--UA--------------GCCUACGACCC- -5' |
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28909 | 5' | -55.2 | NC_006146.1 | + | 155004 | 0.7 | 0.818104 |
Target: 5'- gGCCGCCGGAgggcucuaacccugUCucuGUccacuagaggggacCGGGUGUUGGGa -3' miRNA: 3'- gCGGCGGUCU--------------AGu--UA--------------GCCUACGACCC- -5' |
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28909 | 5' | -55.2 | NC_006146.1 | + | 151926 | 0.7 | 0.818104 |
Target: 5'- gGCCGCCGGAgggcucuaacccugUCucuGUccacuagaggggacCGGGUGUUGGGa -3' miRNA: 3'- gCGGCGGUCU--------------AGu--UA--------------GCCUACGACCC- -5' |
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28909 | 5' | -55.2 | NC_006146.1 | + | 148848 | 0.7 | 0.818104 |
Target: 5'- gGCCGCCGGAgggcucuaacccugUCucuGUccacuagaggggacCGGGUGUUGGGa -3' miRNA: 3'- gCGGCGGUCU--------------AGu--UA--------------GCCUACGACCC- -5' |
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28909 | 5' | -55.2 | NC_006146.1 | + | 115155 | 0.67 | 0.90437 |
Target: 5'- cCGCCGCCGGG-CGGUgGaGAUcUUGGGc -3' miRNA: 3'- -GCGGCGGUCUaGUUAgC-CUAcGACCC- -5' |
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28909 | 5' | -55.2 | NC_006146.1 | + | 32125 | 0.67 | 0.916295 |
Target: 5'- gGgUGCCAcGUCAccccgGGGUGCUGGGg -3' miRNA: 3'- gCgGCGGUcUAGUuag--CCUACGACCC- -5' |
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28909 | 5' | -55.2 | NC_006146.1 | + | 102808 | 0.67 | 0.916295 |
Target: 5'- gGCCGCCcaccuGGAUCGcgCGGggGCUc-- -3' miRNA: 3'- gCGGCGG-----UCUAGUuaGCCuaCGAccc -5' |
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28909 | 5' | -55.2 | NC_006146.1 | + | 75757 | 0.66 | 0.950657 |
Target: 5'- uCGCCGCCgAGuUCAggCGGAccaaGCccagGGGg -3' miRNA: 3'- -GCGGCGG-UCuAGUuaGCCUa---CGa---CCC- -5' |
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28909 | 5' | -55.2 | NC_006146.1 | + | 122388 | 0.66 | 0.946446 |
Target: 5'- gGCgGCCAGGa-AcgCGGAggUGCUGGa -3' miRNA: 3'- gCGgCGGUCUagUuaGCCU--ACGACCc -5' |
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28909 | 5' | -55.2 | NC_006146.1 | + | 108541 | 0.66 | 0.946446 |
Target: 5'- gGCCucuCCGGcgCGgcGUUGGAgugGCUGGGc -3' miRNA: 3'- gCGGc--GGUCuaGU--UAGCCUa--CGACCC- -5' |
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28909 | 5' | -55.2 | NC_006146.1 | + | 50002 | 0.66 | 0.946446 |
Target: 5'- gGCCGUCGGAggCGAUCcgguuGAUGCagccGGGg -3' miRNA: 3'- gCGGCGGUCUa-GUUAGc----CUACGa---CCC- -5' |
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28909 | 5' | -55.2 | NC_006146.1 | + | 13987 | 0.66 | 0.942006 |
Target: 5'- gCGCCGCCacccAGGccUCGGcCGGGcuggUGCUGGa -3' miRNA: 3'- -GCGGCGG----UCU--AGUUaGCCU----ACGACCc -5' |
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28909 | 5' | -55.2 | NC_006146.1 | + | 18858 | 0.67 | 0.927284 |
Target: 5'- gCGCUGCCGGGgugg-UGGAcgUGCgGGGg -3' miRNA: 3'- -GCGGCGGUCUaguuaGCCU--ACGaCCC- -5' |
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28909 | 5' | -55.2 | NC_006146.1 | + | 129624 | 0.67 | 0.916295 |
Target: 5'- cCGUCGCCGGGUCcuccgCGGGcgcgUGCUccgcccGGGa -3' miRNA: 3'- -GCGGCGGUCUAGuua--GCCU----ACGA------CCC- -5' |
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28909 | 5' | -55.2 | NC_006146.1 | + | 135955 | 0.67 | 0.916295 |
Target: 5'- gGgUGCCAcGUCAccccgGGGUGCUGGGg -3' miRNA: 3'- gCgGCGGUcUAGUuag--CCUACGACCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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