miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2891 5' -61.4 NC_001493.1 + 48125 0.67 0.625669
Target:  5'- cGGCGCaCCCGAccccguaacugGACUcuacucccagugCCCGAcgcucgugGCCGGGu -3'
miRNA:   3'- cUCGCG-GGGCU-----------CUGA------------GGGCU--------UGGCCC- -5'
2891 5' -61.4 NC_001493.1 + 43750 0.67 0.625669
Target:  5'- ---aGCCCCGAuGACUCCgCGAugGCCGu- -3'
miRNA:   3'- cucgCGGGGCU-CUGAGG-GCU--UGGCcc -5'
2891 5' -61.4 NC_001493.1 + 113630 0.67 0.625669
Target:  5'- gGAGCGaCCCUGuguGACUCgUGucUCGGGg -3'
miRNA:   3'- -CUCGC-GGGGCu--CUGAGgGCuuGGCCC- -5'
2891 5' -61.4 NC_001493.1 + 54035 0.67 0.625669
Target:  5'- uGGCucGCCUCG-GGCUCCCGAGCUa-- -3'
miRNA:   3'- cUCG--CGGGGCuCUGAGGGCUUGGccc -5'
2891 5' -61.4 NC_001493.1 + 18561 0.67 0.625669
Target:  5'- aGGGCucGCCCCGuGGC-CgUGGACgGGGg -3'
miRNA:   3'- -CUCG--CGGGGCuCUGaGgGCUUGgCCC- -5'
2891 5' -61.4 NC_001493.1 + 69916 0.67 0.609948
Target:  5'- aGGaUGCCCCGguuucugacacggugGGACUCCUGAGCauGGa -3'
miRNA:   3'- cUC-GCGGGGC---------------UCUGAGGGCUUGgcCC- -5'
2891 5' -61.4 NC_001493.1 + 112709 0.67 0.606023
Target:  5'- cGGGCGaUCCCGGGGCUUCuCGA--UGGGu -3'
miRNA:   3'- -CUCGC-GGGGCUCUGAGG-GCUugGCCC- -5'
2891 5' -61.4 NC_001493.1 + 9282 0.68 0.577677
Target:  5'- gGAGCGCggucgcggggaugacCCCGcGGCUCCCGuugaccgcgcaaaaGACCcGGGu -3'
miRNA:   3'- -CUCGCG---------------GGGCuCUGAGGGC--------------UUGG-CCC- -5'
2891 5' -61.4 NC_001493.1 + 124836 0.68 0.577677
Target:  5'- gGAGCGCggucgcggggaugacCCCGcGGCUCCCGuugaccgcgcaaaaGACCcGGGu -3'
miRNA:   3'- -CUCGCG---------------GGGCuCUGAGGGC--------------UUGG-CCC- -5'
2891 5' -61.4 NC_001493.1 + 42669 0.68 0.566996
Target:  5'- --aCGCCCUGAauucaucacaugGACUaCCCGAGUCGGGg -3'
miRNA:   3'- cucGCGGGGCU------------CUGA-GGGCUUGGCCC- -5'
2891 5' -61.4 NC_001493.1 + 19319 0.68 0.566996
Target:  5'- -cGCGCCCCGgagGGACacgguccguuUCCCGAuauucucucgGCCGaGGc -3'
miRNA:   3'- cuCGCGGGGC---UCUG----------AGGGCU----------UGGC-CC- -5'
2891 5' -61.4 NC_001493.1 + 8350 0.68 0.557329
Target:  5'- cGAuCGCCCUGAaGCgcggUUCGGGCCGGGg -3'
miRNA:   3'- -CUcGCGGGGCUcUGa---GGGCUUGGCCC- -5'
2891 5' -61.4 NC_001493.1 + 129142 0.68 0.557329
Target:  5'- --cCGUCCCGAGGCUCaCGAAgCGGu -3'
miRNA:   3'- cucGCGGGGCUCUGAGgGCUUgGCCc -5'
2891 5' -61.4 NC_001493.1 + 13588 0.68 0.557329
Target:  5'- --cCGUCCCGAGGCUCaCGAAgCGGu -3'
miRNA:   3'- cucGCGGGGCUCUGAGgGCUUgGCCc -5'
2891 5' -61.4 NC_001493.1 + 23753 0.68 0.557329
Target:  5'- aGAGCGCUCCGAGGCacguaGAACCGc- -3'
miRNA:   3'- -CUCGCGGGGCUCUGaggg-CUUGGCcc -5'
2891 5' -61.4 NC_001493.1 + 123904 0.68 0.557329
Target:  5'- cGAuCGCCCUGAaGCgcggUUCGGGCCGGGg -3'
miRNA:   3'- -CUcGCGGGGCUcUGa---GGGCUUGGCCC- -5'
2891 5' -61.4 NC_001493.1 + 11082 0.68 0.547711
Target:  5'- uGAGCGCCCUGuAGAC-CUCGGcgaggAUCGGa -3'
miRNA:   3'- -CUCGCGGGGC-UCUGaGGGCU-----UGGCCc -5'
2891 5' -61.4 NC_001493.1 + 126636 0.68 0.547711
Target:  5'- uGAGCGCCCUGuAGAC-CUCGGcgaggAUCGGa -3'
miRNA:   3'- -CUCGCGGGGC-UCUGaGGGCU-----UGGCCc -5'
2891 5' -61.4 NC_001493.1 + 100199 0.68 0.547711
Target:  5'- cGGGCGCCUgugcaagauCGAGAauCUCgCgGAACUGGGu -3'
miRNA:   3'- -CUCGCGGG---------GCUCU--GAG-GgCUUGGCCC- -5'
2891 5' -61.4 NC_001493.1 + 10841 0.68 0.538146
Target:  5'- -cGCGaUCCGGGACUCuCCGGGugucgaacCCGGGg -3'
miRNA:   3'- cuCGCgGGGCUCUGAG-GGCUU--------GGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.