miRNA display CGI


Results 1 - 20 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28910 3' -55 NC_006146.1 + 128559 0.65 0.941835
Target:  5'- aGAUCCuGGAGcGGCAguUCgCGGCcUCg -3'
miRNA:   3'- aCUGGGuUCUC-CCGUguAG-GUCGaAG- -5'
28910 3' -55 NC_006146.1 + 139060 0.65 0.941835
Target:  5'- gGACCC-AGAGGGCGgAagCUGGaCUUUg -3'
miRNA:   3'- aCUGGGuUCUCCCGUgUa-GGUC-GAAG- -5'
28910 3' -55 NC_006146.1 + 51586 0.65 0.941835
Target:  5'- cGGCCgAAGGGGGgACugaggCCGGUUg- -3'
miRNA:   3'- aCUGGgUUCUCCCgUGua---GGUCGAag -5'
28910 3' -55 NC_006146.1 + 95736 0.65 0.941367
Target:  5'- -uGCCCAguggGGGGGGCugGUguuggccCCGGUUUUg -3'
miRNA:   3'- acUGGGU----UCUCCCGugUA-------GGUCGAAG- -5'
28910 3' -55 NC_006146.1 + 123055 0.66 0.937045
Target:  5'- aGACgCCGGGuccAGGGaCGCGUCCuGCg-- -3'
miRNA:   3'- aCUG-GGUUC---UCCC-GUGUAGGuCGaag -5'
28910 3' -55 NC_006146.1 + 140623 0.66 0.937045
Target:  5'- -aGCCCAGGAGGGgACca-CGGCg-- -3'
miRNA:   3'- acUGGGUUCUCCCgUGuagGUCGaag -5'
28910 3' -55 NC_006146.1 + 128455 0.66 0.937045
Target:  5'- cGACCCGgccgccaugcuGGcGGcGCGCAcCCAGCUg- -3'
miRNA:   3'- aCUGGGU-----------UCuCC-CGUGUaGGUCGAag -5'
28910 3' -55 NC_006146.1 + 33162 0.66 0.937045
Target:  5'- gUGGCCCGGcuGGGCACcgCCGcGCc-- -3'
miRNA:   3'- -ACUGGGUUcuCCCGUGuaGGU-CGaag -5'
28910 3' -55 NC_006146.1 + 137988 0.66 0.936553
Target:  5'- gGGCCCGgcgggguGGGGGGUGCGcccCCAGCc-- -3'
miRNA:   3'- aCUGGGU-------UCUCCCGUGUa--GGUCGaag -5'
28910 3' -55 NC_006146.1 + 57258 0.66 0.936553
Target:  5'- cGACCaucagcgCAAcGGGGGCgagacaACAUCCAGCg-- -3'
miRNA:   3'- aCUGG-------GUU-CUCCCG------UGUAGGUCGaag -5'
28910 3' -55 NC_006146.1 + 110500 0.66 0.936553
Target:  5'- aGGUCCAGGAGGGUGCAgauguucUCCAgGCg-- -3'
miRNA:   3'- aCUGGGUUCUCCCGUGU-------AGGU-CGaag -5'
28910 3' -55 NC_006146.1 + 1851 0.66 0.932011
Target:  5'- --cCCCGGGAccccGGGCGCGcgCCGGCcUCc -3'
miRNA:   3'- acuGGGUUCU----CCCGUGUa-GGUCGaAG- -5'
28910 3' -55 NC_006146.1 + 14820 0.66 0.932011
Target:  5'- gGGCCgGAgGAGGGCACGgucUCgGGCc-- -3'
miRNA:   3'- aCUGGgUU-CUCCCGUGU---AGgUCGaag -5'
28910 3' -55 NC_006146.1 + 118780 0.66 0.932011
Target:  5'- gGGCCCGAGcuGGU--GUCCAGCg-- -3'
miRNA:   3'- aCUGGGUUCucCCGugUAGGUCGaag -5'
28910 3' -55 NC_006146.1 + 3715 0.66 0.932011
Target:  5'- --cCCCGGGAccccGGGCGCGcgCCGGCcUCc -3'
miRNA:   3'- acuGGGUUCU----CCCGUGUa-GGUCGaAG- -5'
28910 3' -55 NC_006146.1 + 2783 0.66 0.932011
Target:  5'- --cCCCGGGAccccGGGCGCGcgCCGGCcUCc -3'
miRNA:   3'- acuGGGUUCU----CCCGUGUa-GGUCGaAG- -5'
28910 3' -55 NC_006146.1 + 919 0.66 0.932011
Target:  5'- --cCCCGGGAccccGGGCGCGcgCCGGCcUCc -3'
miRNA:   3'- acuGGGUUCU----CCCGUGUa-GGUCGaAG- -5'
28910 3' -55 NC_006146.1 + 145192 0.66 0.932011
Target:  5'- -aGCUUGAG-GGGCugGcCCGGCUUCc -3'
miRNA:   3'- acUGGGUUCuCCCGugUaGGUCGAAG- -5'
28910 3' -55 NC_006146.1 + 57917 0.66 0.932011
Target:  5'- gGACaugcAGAGGGCGCuggCCGGCg-- -3'
miRNA:   3'- aCUGggu-UCUCCCGUGua-GGUCGaag -5'
28910 3' -55 NC_006146.1 + 153086 0.66 0.926731
Target:  5'- gGACaCCAGG-GGGCGCGagUAGCa-- -3'
miRNA:   3'- aCUG-GGUUCuCCCGUGUagGUCGaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.