miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28910 5' -61.2 NC_006146.1 + 47284 0.66 0.724788
Target:  5'- -cGACGGcu-GCGUGGaCCUCCgCUGGc -3'
miRNA:   3'- uaCUGCCaccCGUACCgGGAGG-GACC- -5'
28910 5' -61.2 NC_006146.1 + 40143 0.66 0.724788
Target:  5'- -gGAgGG-GGGC-UGGCCauaCCUGGa -3'
miRNA:   3'- uaCUgCCaCCCGuACCGGgagGGACC- -5'
28910 5' -61.2 NC_006146.1 + 85642 0.66 0.724788
Target:  5'- -aGACaG-GGGCugguUGGCCCacggggaCCCUGGu -3'
miRNA:   3'- uaCUGcCaCCCGu---ACCGGGa------GGGACC- -5'
28910 5' -61.2 NC_006146.1 + 582 0.66 0.724788
Target:  5'- -aGAgGGgccggGGGCGcGGCCCggcgccagCCCUGc -3'
miRNA:   3'- uaCUgCCa----CCCGUaCCGGGa-------GGGACc -5'
28910 5' -61.2 NC_006146.1 + 1513 0.66 0.724788
Target:  5'- -aGAgGGgccggGGGCGcGGCCCggcgccagCCCUGc -3'
miRNA:   3'- uaCUgCCa----CCCGUaCCGGGa-------GGGACc -5'
28910 5' -61.2 NC_006146.1 + 3377 0.66 0.724788
Target:  5'- -aGAgGGgccggGGGCGcGGCCCggcgccagCCCUGc -3'
miRNA:   3'- uaCUgCCa----CCCGUaCCGGGa-------GGGACc -5'
28910 5' -61.2 NC_006146.1 + 2445 0.66 0.724788
Target:  5'- -aGAgGGgccggGGGCGcGGCCCggcgccagCCCUGc -3'
miRNA:   3'- uaCUgCCa----CCCGUaCCGGGa-------GGGACc -5'
28910 5' -61.2 NC_006146.1 + 72298 0.66 0.723834
Target:  5'- -cGugGGUGGuCGUGGagagaauucuggcCCCUUUCUGGu -3'
miRNA:   3'- uaCugCCACCcGUACC-------------GGGAGGGACC- -5'
28910 5' -61.2 NC_006146.1 + 128612 0.66 0.715224
Target:  5'- cUGGCGcUGGGCuaccUGG-CCUCCCcGGu -3'
miRNA:   3'- uACUGCcACCCGu---ACCgGGAGGGaCC- -5'
28910 5' -61.2 NC_006146.1 + 69644 0.66 0.715224
Target:  5'- -gGGCGGcuaaUGGGCccgcGGUCCUCCuccagCUGGg -3'
miRNA:   3'- uaCUGCC----ACCCGua--CCGGGAGG-----GACC- -5'
28910 5' -61.2 NC_006146.1 + 55812 0.66 0.715224
Target:  5'- -gGGCGGUGGaaGaGGCCgUCCCggccUGGg -3'
miRNA:   3'- uaCUGCCACCcgUaCCGGgAGGG----ACC- -5'
28910 5' -61.2 NC_006146.1 + 162046 0.66 0.715224
Target:  5'- -gGGCGG-GGGCA-GGCUgUUuaaCCUGGa -3'
miRNA:   3'- uaCUGCCaCCCGUaCCGGgAG---GGACC- -5'
28910 5' -61.2 NC_006146.1 + 41755 0.66 0.713303
Target:  5'- -aGACgGGUGGGCuucccgccggaGGCCCUgcgCCCgGGc -3'
miRNA:   3'- uaCUG-CCACCCGua---------CCGGGA---GGGaCC- -5'
28910 5' -61.2 NC_006146.1 + 116997 0.66 0.705594
Target:  5'- --aGCGcGUGGaGCG-GGCCCUggaCCUGGg -3'
miRNA:   3'- uacUGC-CACC-CGUaCCGGGAg--GGACC- -5'
28910 5' -61.2 NC_006146.1 + 14042 0.66 0.699788
Target:  5'- -aGGCGG-GGGCAggcgcaagcgccggcUGGCugcgguCCUCCCgGGu -3'
miRNA:   3'- uaCUGCCaCCCGU---------------ACCG------GGAGGGaCC- -5'
28910 5' -61.2 NC_006146.1 + 90549 0.66 0.695907
Target:  5'- --aGCGGUGGaGCAgGGCCCgggagaagaCCCgGGa -3'
miRNA:   3'- uacUGCCACC-CGUaCCGGGa--------GGGaCC- -5'
28910 5' -61.2 NC_006146.1 + 41363 0.66 0.695907
Target:  5'- cUGGCGGUGGuggcCGUGGCUCugUCUCUGc -3'
miRNA:   3'- uACUGCCACCc---GUACCGGG--AGGGACc -5'
28910 5' -61.2 NC_006146.1 + 135742 0.66 0.695907
Target:  5'- -gGGcCGG-GGGCcgGGUgC-CCCUGGg -3'
miRNA:   3'- uaCU-GCCaCCCGuaCCGgGaGGGACC- -5'
28910 5' -61.2 NC_006146.1 + 135557 0.66 0.695907
Target:  5'- -gGGcCGG-GGGCcgGGUgC-CCCUGGg -3'
miRNA:   3'- uaCU-GCCaCCCGuaCCGgGaGGGACC- -5'
28910 5' -61.2 NC_006146.1 + 135278 0.66 0.695907
Target:  5'- -gGGcCGG-GGGCcgGGUgC-CCCUGGg -3'
miRNA:   3'- uaCU-GCCaCCCGuaCCGgGaGGGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.