miRNA display CGI


Results 41 - 60 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28910 5' -61.2 NC_006146.1 + 2445 0.66 0.724788
Target:  5'- -aGAgGGgccggGGGCGcGGCCCggcgccagCCCUGc -3'
miRNA:   3'- uaCUgCCa----CCCGUaCCGGGa-------GGGACc -5'
28910 5' -61.2 NC_006146.1 + 3377 0.66 0.724788
Target:  5'- -aGAgGGgccggGGGCGcGGCCCggcgccagCCCUGc -3'
miRNA:   3'- uaCUgCCa----CCCGUaCCGGGa-------GGGACc -5'
28910 5' -61.2 NC_006146.1 + 147978 0.66 0.695907
Target:  5'- -gGAUGGUcGuGuGCAUGGCCCUCgUgGGg -3'
miRNA:   3'- uaCUGCCA-C-C-CGUACCGGGAGgGaCC- -5'
28910 5' -61.2 NC_006146.1 + 128612 0.66 0.715224
Target:  5'- cUGGCGcUGGGCuaccUGG-CCUCCCcGGu -3'
miRNA:   3'- uACUGCcACCCGu---ACCgGGAGGGaCC- -5'
28910 5' -61.2 NC_006146.1 + 136300 0.66 0.695907
Target:  5'- -gGGcCGG-GGGCcgGGUgC-CCCUGGg -3'
miRNA:   3'- uaCU-GCCaCCCGuaCCGgGaGGGACC- -5'
28910 5' -61.2 NC_006146.1 + 136486 0.66 0.695907
Target:  5'- -gGGcCGG-GGGCcgGGUgC-CCCUGGg -3'
miRNA:   3'- uaCU-GCCaCCCGuaCCGgGaGGGACC- -5'
28910 5' -61.2 NC_006146.1 + 136393 0.66 0.695907
Target:  5'- -gGGcCGG-GGGCcgGGUgC-CCCUGGg -3'
miRNA:   3'- uaCU-GCCaCCCGuaCCGgGaGGGACC- -5'
28910 5' -61.2 NC_006146.1 + 136579 0.66 0.695907
Target:  5'- -gGGcCGG-GGGCcgGGUgC-CCCUGGg -3'
miRNA:   3'- uaCU-GCCaCCCGuaCCGgGaGGGACC- -5'
28910 5' -61.2 NC_006146.1 + 137043 0.66 0.695907
Target:  5'- -gGGcCGG-GGGCcgGGUgC-CCCUGGg -3'
miRNA:   3'- uaCU-GCCaCCCGuaCCGgGaGGGACC- -5'
28910 5' -61.2 NC_006146.1 + 47284 0.66 0.724788
Target:  5'- -cGACGGcu-GCGUGGaCCUCCgCUGGc -3'
miRNA:   3'- uaCUGCCaccCGUACCgGGAGG-GACC- -5'
28910 5' -61.2 NC_006146.1 + 40143 0.66 0.724788
Target:  5'- -gGAgGG-GGGC-UGGCCauaCCUGGa -3'
miRNA:   3'- uaCUgCCaCCCGuACCGGgagGGACC- -5'
28910 5' -61.2 NC_006146.1 + 43208 0.67 0.637017
Target:  5'- -aGGCGGggaugGGGCGcUGcuggugagaggaGCCC-CCCUGGa -3'
miRNA:   3'- uaCUGCCa----CCCGU-AC------------CGGGaGGGACC- -5'
28910 5' -61.2 NC_006146.1 + 92251 0.67 0.655756
Target:  5'- uGUGGCugcugcuGGgGGGCG-GGCCCggCCUGGg -3'
miRNA:   3'- -UACUG-------CCaCCCGUaCCGGGagGGACC- -5'
28910 5' -61.2 NC_006146.1 + 92169 0.67 0.656741
Target:  5'- cUGcUGGgGGGCG-GGCCCggCCUGGg -3'
miRNA:   3'- uACuGCCaCCCGUaCCGGGagGGACC- -5'
28910 5' -61.2 NC_006146.1 + 92199 0.67 0.656741
Target:  5'- cUGcUGGgGGGCG-GGCCCggCCUGGg -3'
miRNA:   3'- uACuGCCaCCCGUaCCGGGagGGACC- -5'
28910 5' -61.2 NC_006146.1 + 92289 0.67 0.656741
Target:  5'- cUGcUGGgGGGCG-GGCCCggCCUGGg -3'
miRNA:   3'- uACuGCCaCCCGUaCCGGGagGGACC- -5'
28910 5' -61.2 NC_006146.1 + 33781 0.67 0.646884
Target:  5'- ----gGGUGGGCGUGGUCCgaugggUCCgcgGGu -3'
miRNA:   3'- uacugCCACCCGUACCGGGa-----GGGa--CC- -5'
28910 5' -61.2 NC_006146.1 + 168520 0.67 0.637017
Target:  5'- uGUGugGa--GGCcgGGCCUcCCCUGGg -3'
miRNA:   3'- -UACugCcacCCGuaCCGGGaGGGACC- -5'
28910 5' -61.2 NC_006146.1 + 92319 0.67 0.656741
Target:  5'- cUGcUGGgGGGCG-GGCCCggCCUGGg -3'
miRNA:   3'- uACuGCCaCCCGUaCCGGGagGGACC- -5'
28910 5' -61.2 NC_006146.1 + 167588 0.67 0.637017
Target:  5'- uGUGugGa--GGCcgGGCCUcCCCUGGg -3'
miRNA:   3'- -UACugCcacCCGuaCCGGGaGGGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.