Results 61 - 80 of 107 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28910 | 5' | -61.2 | NC_006146.1 | + | 92199 | 0.67 | 0.656741 |
Target: 5'- cUGcUGGgGGGCG-GGCCCggCCUGGg -3' miRNA: 3'- uACuGCCaCCCGUaCCGGGagGGACC- -5' |
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28910 | 5' | -61.2 | NC_006146.1 | + | 92050 | 0.67 | 0.656741 |
Target: 5'- cUGcUGGgGGGCG-GGCCCggCCUGGg -3' miRNA: 3'- uACuGCCaCCCGUaCCGGGagGGACC- -5' |
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28910 | 5' | -61.2 | NC_006146.1 | + | 92251 | 0.67 | 0.655756 |
Target: 5'- uGUGGCugcugcuGGgGGGCG-GGCCCggCCUGGg -3' miRNA: 3'- -UACUG-------CCaCCCGUaCCGGGagGGACC- -5' |
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28910 | 5' | -61.2 | NC_006146.1 | + | 56628 | 0.67 | 0.656741 |
Target: 5'- uUGGCucuGUuuccuaucugGGGCAccacuacgagcUGGCCCUCCCUGa -3' miRNA: 3'- uACUGc--CA----------CCCGU-----------ACCGGGAGGGACc -5' |
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28910 | 5' | -61.2 | NC_006146.1 | + | 51231 | 0.67 | 0.607422 |
Target: 5'- gGUGGCgGGUGaGGUuggugAUGGCCCUugUCCUGa -3' miRNA: 3'- -UACUG-CCAC-CCG-----UACCGGGA--GGGACc -5' |
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28910 | 5' | -61.2 | NC_006146.1 | + | 92020 | 0.67 | 0.656741 |
Target: 5'- cUGcUGGgGGGCG-GGCCCggCCUGGg -3' miRNA: 3'- uACuGCCaCCCGUaCCGGGagGGACC- -5' |
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28910 | 5' | -61.2 | NC_006146.1 | + | 92169 | 0.67 | 0.656741 |
Target: 5'- cUGcUGGgGGGCG-GGCCCggCCUGGg -3' miRNA: 3'- uACuGCCaCCCGUaCCGGGagGGACC- -5' |
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28910 | 5' | -61.2 | NC_006146.1 | + | 92109 | 0.67 | 0.656741 |
Target: 5'- cUGcUGGgGGGCG-GGCCCggCCUGGg -3' miRNA: 3'- uACuGCCaCCCGUaCCGGGagGGACC- -5' |
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28910 | 5' | -61.2 | NC_006146.1 | + | 92139 | 0.67 | 0.656741 |
Target: 5'- cUGcUGGgGGGCG-GGCCCggCCUGGg -3' miRNA: 3'- uACuGCCaCCCGUaCCGGGagGGACC- -5' |
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28910 | 5' | -61.2 | NC_006146.1 | + | 142461 | 0.68 | 0.55852 |
Target: 5'- -aGGCGGUGuGGUggGGCUC-CCgUGGa -3' miRNA: 3'- uaCUGCCAC-CCGuaCCGGGaGGgACC- -5' |
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28910 | 5' | -61.2 | NC_006146.1 | + | 47093 | 0.68 | 0.568229 |
Target: 5'- -aGACGGUGGGC-UGcGCCgUCUCg-- -3' miRNA: 3'- uaCUGCCACCCGuAC-CGGgAGGGacc -5' |
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28910 | 5' | -61.2 | NC_006146.1 | + | 51844 | 0.68 | 0.548859 |
Target: 5'- -aGGgGGgcucgGGGCcUGGCCCgagCCCgGGg -3' miRNA: 3'- uaCUgCCa----CCCGuACCGGGa--GGGaCC- -5' |
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28910 | 5' | -61.2 | NC_006146.1 | + | 17588 | 0.68 | 0.577979 |
Target: 5'- -gGAUGcUGGGCGaccUGGCCCgggCCUGGu -3' miRNA: 3'- uaCUGCcACCCGU---ACCGGGag-GGACC- -5' |
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28910 | 5' | -61.2 | NC_006146.1 | + | 33397 | 0.68 | 0.548859 |
Target: 5'- ---cCGGgugGGGgGUGGCCCg-CCUGGg -3' miRNA: 3'- uacuGCCa--CCCgUACCGGGagGGACC- -5' |
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28910 | 5' | -61.2 | NC_006146.1 | + | 9454 | 0.69 | 0.501443 |
Target: 5'- uGUGucACGGUGGGCGcggGGUCCgcgCCCucUGGc -3' miRNA: 3'- -UAC--UGCCACCCGUa--CCGGGa--GGG--ACC- -5' |
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28910 | 5' | -61.2 | NC_006146.1 | + | 127383 | 0.69 | 0.539251 |
Target: 5'- cUGAUGGUGgccGGCAgccUGGCCCggaCCCUacuGGg -3' miRNA: 3'- uACUGCCAC---CCGU---ACCGGGa--GGGA---CC- -5' |
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28910 | 5' | -61.2 | NC_006146.1 | + | 146679 | 0.69 | 0.510792 |
Target: 5'- -gGGCGGUGGGC--GGCCCcggCCCc-- -3' miRNA: 3'- uaCUGCCACCCGuaCCGGGa--GGGacc -5' |
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28910 | 5' | -61.2 | NC_006146.1 | + | 54053 | 0.69 | 0.501443 |
Target: 5'- -cGGCGGUGGuCAgGGCCCa-CCUGGc -3' miRNA: 3'- uaCUGCCACCcGUaCCGGGagGGACC- -5' |
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28910 | 5' | -61.2 | NC_006146.1 | + | 33748 | 0.69 | 0.501443 |
Target: 5'- ---cCGGUGGGUGUGGUCCgcugggUCCgCUGGu -3' miRNA: 3'- uacuGCCACCCGUACCGGG------AGG-GACC- -5' |
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28910 | 5' | -61.2 | NC_006146.1 | + | 161239 | 0.7 | 0.464846 |
Target: 5'- uAUGugGG-GGGCAguauaagGGCCCgUCCCa-- -3' miRNA: 3'- -UACugCCaCCCGUa------CCGGG-AGGGacc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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