Results 41 - 60 of 107 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28910 | 5' | -61.2 | NC_006146.1 | + | 169452 | 0.67 | 0.637017 |
Target: 5'- uGUGugGa--GGCcgGGCCUcCCCUGGg -3' miRNA: 3'- -UACugCcacCCGuaCCGGGaGGGACC- -5' |
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28910 | 5' | -61.2 | NC_006146.1 | + | 168520 | 0.67 | 0.637017 |
Target: 5'- uGUGugGa--GGCcgGGCCUcCCCUGGg -3' miRNA: 3'- -UACugCcacCCGuaCCGGGaGGGACC- -5' |
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28910 | 5' | -61.2 | NC_006146.1 | + | 33781 | 0.67 | 0.646884 |
Target: 5'- ----gGGUGGGCGUGGUCCgaugggUCCgcgGGu -3' miRNA: 3'- uacugCCACCCGUACCGGGa-----GGGa--CC- -5' |
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28910 | 5' | -61.2 | NC_006146.1 | + | 92251 | 0.67 | 0.655756 |
Target: 5'- uGUGGCugcugcuGGgGGGCG-GGCCCggCCUGGg -3' miRNA: 3'- -UACUG-------CCaCCCGUaCCGGGagGGACC- -5' |
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28910 | 5' | -61.2 | NC_006146.1 | + | 43208 | 0.67 | 0.637017 |
Target: 5'- -aGGCGGggaugGGGCGcUGcuggugagaggaGCCC-CCCUGGa -3' miRNA: 3'- uaCUGCCa----CCCGU-AC------------CGGGaGGGACC- -5' |
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28910 | 5' | -61.2 | NC_006146.1 | + | 170383 | 0.67 | 0.637017 |
Target: 5'- uGUGugGa--GGCcgGGCCUcCCCUGGg -3' miRNA: 3'- -UACugCcacCCGuaCCGGGaGGGACC- -5' |
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28910 | 5' | -61.2 | NC_006146.1 | + | 51231 | 0.67 | 0.607422 |
Target: 5'- gGUGGCgGGUGaGGUuggugAUGGCCCUugUCCUGa -3' miRNA: 3'- -UACUG-CCAC-CCG-----UACCGGGA--GGGACc -5' |
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28910 | 5' | -61.2 | NC_006146.1 | + | 56628 | 0.67 | 0.656741 |
Target: 5'- uUGGCucuGUuuccuaucugGGGCAccacuacgagcUGGCCCUCCCUGa -3' miRNA: 3'- uACUGc--CA----------CCCGU-----------ACCGGGAGGGACc -5' |
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28910 | 5' | -61.2 | NC_006146.1 | + | 92319 | 0.67 | 0.656741 |
Target: 5'- cUGcUGGgGGGCG-GGCCCggCCUGGg -3' miRNA: 3'- uACuGCCaCCCGUaCCGGGagGGACC- -5' |
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28910 | 5' | -61.2 | NC_006146.1 | + | 92289 | 0.67 | 0.656741 |
Target: 5'- cUGcUGGgGGGCG-GGCCCggCCUGGg -3' miRNA: 3'- uACuGCCaCCCGUaCCGGGagGGACC- -5' |
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28910 | 5' | -61.2 | NC_006146.1 | + | 92199 | 0.67 | 0.656741 |
Target: 5'- cUGcUGGgGGGCG-GGCCCggCCUGGg -3' miRNA: 3'- uACuGCCaCCCGUaCCGGGagGGACC- -5' |
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28910 | 5' | -61.2 | NC_006146.1 | + | 92169 | 0.67 | 0.656741 |
Target: 5'- cUGcUGGgGGGCG-GGCCCggCCUGGg -3' miRNA: 3'- uACuGCCaCCCGUaCCGGGagGGACC- -5' |
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28910 | 5' | -61.2 | NC_006146.1 | + | 92139 | 0.67 | 0.656741 |
Target: 5'- cUGcUGGgGGGCG-GGCCCggCCUGGg -3' miRNA: 3'- uACuGCCaCCCGUaCCGGGagGGACC- -5' |
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28910 | 5' | -61.2 | NC_006146.1 | + | 92109 | 0.67 | 0.656741 |
Target: 5'- cUGcUGGgGGGCG-GGCCCggCCUGGg -3' miRNA: 3'- uACuGCCaCCCGUaCCGGGagGGACC- -5' |
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28910 | 5' | -61.2 | NC_006146.1 | + | 92050 | 0.67 | 0.656741 |
Target: 5'- cUGcUGGgGGGCG-GGCCCggCCUGGg -3' miRNA: 3'- uACuGCCaCCCGUaCCGGGagGGACC- -5' |
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28910 | 5' | -61.2 | NC_006146.1 | + | 167588 | 0.67 | 0.637017 |
Target: 5'- uGUGugGa--GGCcgGGCCUcCCCUGGg -3' miRNA: 3'- -UACugCcacCCGuaCCGGGaGGGACC- -5' |
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28910 | 5' | -61.2 | NC_006146.1 | + | 2445 | 0.66 | 0.724788 |
Target: 5'- -aGAgGGgccggGGGCGcGGCCCggcgccagCCCUGc -3' miRNA: 3'- uaCUgCCa----CCCGUaCCGGGa-------GGGACc -5' |
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28910 | 5' | -61.2 | NC_006146.1 | + | 72298 | 0.66 | 0.723834 |
Target: 5'- -cGugGGUGGuCGUGGagagaauucuggcCCCUUUCUGGu -3' miRNA: 3'- uaCugCCACCcGUACC-------------GGGAGGGACC- -5' |
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28910 | 5' | -61.2 | NC_006146.1 | + | 162046 | 0.66 | 0.715224 |
Target: 5'- -gGGCGG-GGGCA-GGCUgUUuaaCCUGGa -3' miRNA: 3'- uaCUGCCaCCCGUaCCGGgAG---GGACC- -5' |
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28910 | 5' | -61.2 | NC_006146.1 | + | 40143 | 0.66 | 0.724788 |
Target: 5'- -gGAgGG-GGGC-UGGCCauaCCUGGa -3' miRNA: 3'- uaCUgCCaCCCGuACCGGgagGGACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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