miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28910 5' -61.2 NC_006146.1 + 17139 1.08 0.001204
Target:  5'- cAUGACGGUGGGCAUGGCCCUCCCUGGa -3'
miRNA:   3'- -UACUGCCACCCGUACCGGGAGGGACC- -5'
28910 5' -61.2 NC_006146.1 + 44705 0.77 0.187858
Target:  5'- -cGGCGGUGGcCGUGGCCC-CCgCUGGc -3'
miRNA:   3'- uaCUGCCACCcGUACCGGGaGG-GACC- -5'
28910 5' -61.2 NC_006146.1 + 137857 0.75 0.238239
Target:  5'- -gGugGGUGGGCGUgucccgGGCCCcgCCCcGGg -3'
miRNA:   3'- uaCugCCACCCGUA------CCGGGa-GGGaCC- -5'
28910 5' -61.2 NC_006146.1 + 41304 0.75 0.243855
Target:  5'- -aGACGGcgGaGGCAUGGCgucCCUCCCUGu -3'
miRNA:   3'- uaCUGCCa-C-CCGUACCG---GGAGGGACc -5'
28910 5' -61.2 NC_006146.1 + 66672 0.75 0.243856
Target:  5'- cUGAgGG-GGGCggGGCaCCUCCCUGa -3'
miRNA:   3'- uACUgCCaCCCGuaCCG-GGAGGGACc -5'
28910 5' -61.2 NC_006146.1 + 43635 0.74 0.27989
Target:  5'- -gGGCGGcgGGGCGUGGCCg--CCUGGg -3'
miRNA:   3'- uaCUGCCa-CCCGUACCGGgagGGACC- -5'
28910 5' -61.2 NC_006146.1 + 45524 0.73 0.313051
Target:  5'- --cACGGUGGGgGccUGGgCCUCCUUGGg -3'
miRNA:   3'- uacUGCCACCCgU--ACCgGGAGGGACC- -5'
28910 5' -61.2 NC_006146.1 + 63349 0.73 0.320031
Target:  5'- uGUGcCGGUaacuGGGCAcagGGCCCUCCUgGGg -3'
miRNA:   3'- -UACuGCCA----CCCGUa--CCGGGAGGGaCC- -5'
28910 5' -61.2 NC_006146.1 + 71678 0.72 0.359719
Target:  5'- -aGACGGUG-GUcgGGCgcgccgaggccgcggCCUCCCUGGa -3'
miRNA:   3'- uaCUGCCACcCGuaCCG---------------GGAGGGACC- -5'
28910 5' -61.2 NC_006146.1 + 30144 0.72 0.37212
Target:  5'- -gGGgGGUGGGCAUGGCCacgcaUCCgaGa -3'
miRNA:   3'- uaCUgCCACCCGUACCGGg----AGGgaCc -5'
28910 5' -61.2 NC_006146.1 + 64249 0.71 0.396144
Target:  5'- -gGGCGGgagGGGCGUGGCUcgCUCCgaacaUGGg -3'
miRNA:   3'- uaCUGCCa--CCCGUACCGG--GAGGg----ACC- -5'
28910 5' -61.2 NC_006146.1 + 167996 0.71 0.396144
Target:  5'- --cAUGGUGGGCGUcaGGCCCUCuCCUc- -3'
miRNA:   3'- uacUGCCACCCGUA--CCGGGAG-GGAcc -5'
28910 5' -61.2 NC_006146.1 + 52982 0.71 0.396144
Target:  5'- -gGGCGGggcGGGCGUcucgaGGCCCcucuucuggCCCUGGg -3'
miRNA:   3'- uaCUGCCa--CCCGUA-----CCGGGa--------GGGACC- -5'
28910 5' -61.2 NC_006146.1 + 123109 0.71 0.403544
Target:  5'- -cGGCGGUGGGCGcuagacggGGCUUUcagacggCCCUGGa -3'
miRNA:   3'- uaCUGCCACCCGUa-------CCGGGA-------GGGACC- -5'
28910 5' -61.2 NC_006146.1 + 167093 0.71 0.404371
Target:  5'- aGUGAgGG-GGGCGUGGCCaUCCCc-- -3'
miRNA:   3'- -UACUgCCaCCCGUACCGGgAGGGacc -5'
28910 5' -61.2 NC_006146.1 + 33967 0.71 0.412706
Target:  5'- ----gGGUGGGCGUGGUCCgcugggUCCgCUGGu -3'
miRNA:   3'- uacugCCACCCGUACCGGG------AGG-GACC- -5'
28910 5' -61.2 NC_006146.1 + 56812 0.71 0.412706
Target:  5'- cUGGCGGgcgGGGCuucUGGCCC-CCgaGGc -3'
miRNA:   3'- uACUGCCa--CCCGu--ACCGGGaGGgaCC- -5'
28910 5' -61.2 NC_006146.1 + 49954 0.71 0.429688
Target:  5'- cGUGACGGUucuuggaguGGGCgAUGGUCCUCU-UGGa -3'
miRNA:   3'- -UACUGCCA---------CCCG-UACCGGGAGGgACC- -5'
28910 5' -61.2 NC_006146.1 + 165208 0.7 0.438332
Target:  5'- gGUGAUGGUGGGUuuuugGGUCCUCgCUa- -3'
miRNA:   3'- -UACUGCCACCCGua---CCGGGAGgGAcc -5'
28910 5' -61.2 NC_006146.1 + 118060 0.7 0.447075
Target:  5'- -gGGCGG-GGGCGgcggcggcucGGCCCUCcgcauCCUGGg -3'
miRNA:   3'- uaCUGCCaCCCGUa---------CCGGGAG-----GGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.