miRNA display CGI


Results 21 - 40 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28910 5' -61.2 NC_006146.1 + 167806 0.7 0.464846
Target:  5'- cGUGGCGGgcgcGCGUGGCCCgccCCCgGGu -3'
miRNA:   3'- -UACUGCCacc-CGUACCGGGa--GGGaCC- -5'
28910 5' -61.2 NC_006146.1 + 168738 0.7 0.464846
Target:  5'- cGUGGCGGgcgcGCGUGGCCCgccCCCgGGu -3'
miRNA:   3'- -UACUGCCacc-CGUACCGGGa--GGGaCC- -5'
28910 5' -61.2 NC_006146.1 + 169670 0.7 0.464846
Target:  5'- cGUGGCGGgcgcGCGUGGCCCgccCCCgGGu -3'
miRNA:   3'- -UACUGCCacc-CGUACCGGGa--GGGaCC- -5'
28910 5' -61.2 NC_006146.1 + 161239 0.7 0.464846
Target:  5'- uAUGugGG-GGGCAguauaagGGCCCgUCCCa-- -3'
miRNA:   3'- -UACugCCaCCCGUa------CCGGG-AGGGacc -5'
28910 5' -61.2 NC_006146.1 + 22728 0.7 0.471152
Target:  5'- -gGACGcacGUGGGCAUGGCCgUagagaagacccgggCCCUGa -3'
miRNA:   3'- uaCUGC---CACCCGUACCGGgA--------------GGGACc -5'
28910 5' -61.2 NC_006146.1 + 44395 0.7 0.473868
Target:  5'- cGUGugGGgccGGGCAcGGCgCCUUCCUcgaGGg -3'
miRNA:   3'- -UACugCCa--CCCGUaCCG-GGAGGGA---CC- -5'
28910 5' -61.2 NC_006146.1 + 126016 0.7 0.480236
Target:  5'- -gGGCGGUGGGCuucugcugcugGGCCgggagggacugggCUCCCUuGGg -3'
miRNA:   3'- uaCUGCCACCCGua---------CCGG-------------GAGGGA-CC- -5'
28910 5' -61.2 NC_006146.1 + 33603 0.7 0.483893
Target:  5'- ----gGGUGGGCGUGGUCCgcggguucggugcaCCUGGa -3'
miRNA:   3'- uacugCCACCCGUACCGGGag------------GGACC- -5'
28910 5' -61.2 NC_006146.1 + 9454 0.69 0.501443
Target:  5'- uGUGucACGGUGGGCGcggGGUCCgcgCCCucUGGc -3'
miRNA:   3'- -UAC--UGCCACCCGUa--CCGGGa--GGG--ACC- -5'
28910 5' -61.2 NC_006146.1 + 54053 0.69 0.501443
Target:  5'- -cGGCGGUGGuCAgGGCCCa-CCUGGc -3'
miRNA:   3'- uaCUGCCACCcGUaCCGGGagGGACC- -5'
28910 5' -61.2 NC_006146.1 + 33748 0.69 0.501443
Target:  5'- ---cCGGUGGGUGUGGUCCgcugggUCCgCUGGu -3'
miRNA:   3'- uacuGCCACCCGUACCGGG------AGG-GACC- -5'
28910 5' -61.2 NC_006146.1 + 146679 0.69 0.510792
Target:  5'- -gGGCGGUGGGC--GGCCCcggCCCc-- -3'
miRNA:   3'- uaCUGCCACCCGuaCCGGGa--GGGacc -5'
28910 5' -61.2 NC_006146.1 + 127383 0.69 0.539251
Target:  5'- cUGAUGGUGgccGGCAgccUGGCCCggaCCCUacuGGg -3'
miRNA:   3'- uACUGCCAC---CCGU---ACCGGGa--GGGA---CC- -5'
28910 5' -61.2 NC_006146.1 + 51844 0.68 0.548859
Target:  5'- -aGGgGGgcucgGGGCcUGGCCCgagCCCgGGg -3'
miRNA:   3'- uaCUgCCa----CCCGuACCGGGa--GGGaCC- -5'
28910 5' -61.2 NC_006146.1 + 33397 0.68 0.548859
Target:  5'- ---cCGGgugGGGgGUGGCCCg-CCUGGg -3'
miRNA:   3'- uacuGCCa--CCCgUACCGGGagGGACC- -5'
28910 5' -61.2 NC_006146.1 + 142461 0.68 0.55852
Target:  5'- -aGGCGGUGuGGUggGGCUC-CCgUGGa -3'
miRNA:   3'- uaCUGCCAC-CCGuaCCGGGaGGgACC- -5'
28910 5' -61.2 NC_006146.1 + 47093 0.68 0.568229
Target:  5'- -aGACGGUGGGC-UGcGCCgUCUCg-- -3'
miRNA:   3'- uaCUGCCACCCGuAC-CGGgAGGGacc -5'
28910 5' -61.2 NC_006146.1 + 17588 0.68 0.577979
Target:  5'- -gGAUGcUGGGCGaccUGGCCCgggCCUGGu -3'
miRNA:   3'- uaCUGCcACCCGU---ACCGGGag-GGACC- -5'
28910 5' -61.2 NC_006146.1 + 51231 0.67 0.607422
Target:  5'- gGUGGCgGGUGaGGUuggugAUGGCCCUugUCCUGa -3'
miRNA:   3'- -UACUG-CCAC-CCG-----UACCGGGA--GGGACc -5'
28910 5' -61.2 NC_006146.1 + 137993 0.67 0.607422
Target:  5'- -cGGCGGggugGGGgGUGcGCCCccagccggaCCCUGGu -3'
miRNA:   3'- uaCUGCCa---CCCgUAC-CGGGa--------GGGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.