miRNA display CGI


Results 21 - 40 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28910 5' -61.2 NC_006146.1 + 43208 0.67 0.637017
Target:  5'- -aGGCGGggaugGGGCGcUGcuggugagaggaGCCC-CCCUGGa -3'
miRNA:   3'- uaCUGCCa----CCCGU-AC------------CGGGaGGGACC- -5'
28910 5' -61.2 NC_006146.1 + 43635 0.74 0.27989
Target:  5'- -gGGCGGcgGGGCGUGGCCg--CCUGGg -3'
miRNA:   3'- uaCUGCCa-CCCGUACCGGgagGGACC- -5'
28910 5' -61.2 NC_006146.1 + 44395 0.7 0.473868
Target:  5'- cGUGugGGgccGGGCAcGGCgCCUUCCUcgaGGg -3'
miRNA:   3'- -UACugCCa--CCCGUaCCG-GGAGGGA---CC- -5'
28910 5' -61.2 NC_006146.1 + 44705 0.77 0.187858
Target:  5'- -cGGCGGUGGcCGUGGCCC-CCgCUGGc -3'
miRNA:   3'- uaCUGCCACCcGUACCGGGaGG-GACC- -5'
28910 5' -61.2 NC_006146.1 + 45524 0.73 0.313051
Target:  5'- --cACGGUGGGgGccUGGgCCUCCUUGGg -3'
miRNA:   3'- uacUGCCACCCgU--ACCgGGAGGGACC- -5'
28910 5' -61.2 NC_006146.1 + 47093 0.68 0.568229
Target:  5'- -aGACGGUGGGC-UGcGCCgUCUCg-- -3'
miRNA:   3'- uaCUGCCACCCGuAC-CGGgAGGGacc -5'
28910 5' -61.2 NC_006146.1 + 47284 0.66 0.724788
Target:  5'- -cGACGGcu-GCGUGGaCCUCCgCUGGc -3'
miRNA:   3'- uaCUGCCaccCGUACCgGGAGG-GACC- -5'
28910 5' -61.2 NC_006146.1 + 49954 0.71 0.429688
Target:  5'- cGUGACGGUucuuggaguGGGCgAUGGUCCUCU-UGGa -3'
miRNA:   3'- -UACUGCCA---------CCCG-UACCGGGAGGgACC- -5'
28910 5' -61.2 NC_006146.1 + 51231 0.67 0.607422
Target:  5'- gGUGGCgGGUGaGGUuggugAUGGCCCUugUCCUGa -3'
miRNA:   3'- -UACUG-CCAC-CCG-----UACCGGGA--GGGACc -5'
28910 5' -61.2 NC_006146.1 + 51844 0.68 0.548859
Target:  5'- -aGGgGGgcucgGGGCcUGGCCCgagCCCgGGg -3'
miRNA:   3'- uaCUgCCa----CCCGuACCGGGa--GGGaCC- -5'
28910 5' -61.2 NC_006146.1 + 52982 0.71 0.396144
Target:  5'- -gGGCGGggcGGGCGUcucgaGGCCCcucuucuggCCCUGGg -3'
miRNA:   3'- uaCUGCCa--CCCGUA-----CCGGGa--------GGGACC- -5'
28910 5' -61.2 NC_006146.1 + 54053 0.69 0.501443
Target:  5'- -cGGCGGUGGuCAgGGCCCa-CCUGGc -3'
miRNA:   3'- uaCUGCCACCcGUaCCGGGagGGACC- -5'
28910 5' -61.2 NC_006146.1 + 55812 0.66 0.715224
Target:  5'- -gGGCGGUGGaaGaGGCCgUCCCggccUGGg -3'
miRNA:   3'- uaCUGCCACCcgUaCCGGgAGGG----ACC- -5'
28910 5' -61.2 NC_006146.1 + 56628 0.67 0.656741
Target:  5'- uUGGCucuGUuuccuaucugGGGCAccacuacgagcUGGCCCUCCCUGa -3'
miRNA:   3'- uACUGc--CA----------CCCGU-----------ACCGGGAGGGACc -5'
28910 5' -61.2 NC_006146.1 + 56812 0.71 0.412706
Target:  5'- cUGGCGGgcgGGGCuucUGGCCC-CCgaGGc -3'
miRNA:   3'- uACUGCCa--CCCGu--ACCGGGaGGgaCC- -5'
28910 5' -61.2 NC_006146.1 + 57379 0.66 0.695907
Target:  5'- gGUGGCgccGGUGGGC-UGGCCCcgcgaccgugCCC-GGc -3'
miRNA:   3'- -UACUG---CCACCCGuACCGGGa---------GGGaCC- -5'
28910 5' -61.2 NC_006146.1 + 63349 0.73 0.320031
Target:  5'- uGUGcCGGUaacuGGGCAcagGGCCCUCCUgGGg -3'
miRNA:   3'- -UACuGCCA----CCCGUa--CCGGGAGGGaCC- -5'
28910 5' -61.2 NC_006146.1 + 64249 0.71 0.396144
Target:  5'- -gGGCGGgagGGGCGUGGCUcgCUCCgaacaUGGg -3'
miRNA:   3'- uaCUGCCa--CCCGUACCGG--GAGGg----ACC- -5'
28910 5' -61.2 NC_006146.1 + 66672 0.75 0.243856
Target:  5'- cUGAgGG-GGGCggGGCaCCUCCCUGa -3'
miRNA:   3'- uACUgCCaCCCGuaCCG-GGAGGGACc -5'
28910 5' -61.2 NC_006146.1 + 69644 0.66 0.715224
Target:  5'- -gGGCGGcuaaUGGGCccgcGGUCCUCCuccagCUGGg -3'
miRNA:   3'- uaCUGCC----ACCCGua--CCGGGAGG-----GACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.