miRNA display CGI


Results 41 - 60 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28910 5' -61.2 NC_006146.1 + 71678 0.72 0.359719
Target:  5'- -aGACGGUG-GUcgGGCgcgccgaggccgcggCCUCCCUGGa -3'
miRNA:   3'- uaCUGCCACcCGuaCCG---------------GGAGGGACC- -5'
28910 5' -61.2 NC_006146.1 + 72298 0.66 0.723834
Target:  5'- -cGugGGUGGuCGUGGagagaauucuggcCCCUUUCUGGu -3'
miRNA:   3'- uaCugCCACCcGUACC-------------GGGAGGGACC- -5'
28910 5' -61.2 NC_006146.1 + 85642 0.66 0.724788
Target:  5'- -aGACaG-GGGCugguUGGCCCacggggaCCCUGGu -3'
miRNA:   3'- uaCUGcCaCCCGu---ACCGGGa------GGGACC- -5'
28910 5' -61.2 NC_006146.1 + 90549 0.66 0.695907
Target:  5'- --aGCGGUGGaGCAgGGCCCgggagaagaCCCgGGa -3'
miRNA:   3'- uacUGCCACC-CGUaCCGGGa--------GGGaCC- -5'
28910 5' -61.2 NC_006146.1 + 92020 0.67 0.656741
Target:  5'- cUGcUGGgGGGCG-GGCCCggCCUGGg -3'
miRNA:   3'- uACuGCCaCCCGUaCCGGGagGGACC- -5'
28910 5' -61.2 NC_006146.1 + 92050 0.67 0.656741
Target:  5'- cUGcUGGgGGGCG-GGCCCggCCUGGg -3'
miRNA:   3'- uACuGCCaCCCGUaCCGGGagGGACC- -5'
28910 5' -61.2 NC_006146.1 + 92109 0.67 0.656741
Target:  5'- cUGcUGGgGGGCG-GGCCCggCCUGGg -3'
miRNA:   3'- uACuGCCaCCCGUaCCGGGagGGACC- -5'
28910 5' -61.2 NC_006146.1 + 92139 0.67 0.656741
Target:  5'- cUGcUGGgGGGCG-GGCCCggCCUGGg -3'
miRNA:   3'- uACuGCCaCCCGUaCCGGGagGGACC- -5'
28910 5' -61.2 NC_006146.1 + 92169 0.67 0.656741
Target:  5'- cUGcUGGgGGGCG-GGCCCggCCUGGg -3'
miRNA:   3'- uACuGCCaCCCGUaCCGGGagGGACC- -5'
28910 5' -61.2 NC_006146.1 + 92199 0.67 0.656741
Target:  5'- cUGcUGGgGGGCG-GGCCCggCCUGGg -3'
miRNA:   3'- uACuGCCaCCCGUaCCGGGagGGACC- -5'
28910 5' -61.2 NC_006146.1 + 92251 0.67 0.655756
Target:  5'- uGUGGCugcugcuGGgGGGCG-GGCCCggCCUGGg -3'
miRNA:   3'- -UACUG-------CCaCCCGUaCCGGGagGGACC- -5'
28910 5' -61.2 NC_006146.1 + 92289 0.67 0.656741
Target:  5'- cUGcUGGgGGGCG-GGCCCggCCUGGg -3'
miRNA:   3'- uACuGCCaCCCGUaCCGGGagGGACC- -5'
28910 5' -61.2 NC_006146.1 + 92319 0.67 0.656741
Target:  5'- cUGcUGGgGGGCG-GGCCCggCCUGGg -3'
miRNA:   3'- uACuGCCaCCCGUaCCGGGagGGACC- -5'
28910 5' -61.2 NC_006146.1 + 113637 0.66 0.68617
Target:  5'- uUGACGGUgcuccgGGGgAUGGCCUUgcugaccacgggCCCgUGGa -3'
miRNA:   3'- uACUGCCA------CCCgUACCGGGA------------GGG-ACC- -5'
28910 5' -61.2 NC_006146.1 + 116997 0.66 0.705594
Target:  5'- --aGCGcGUGGaGCG-GGCCCUggaCCUGGg -3'
miRNA:   3'- uacUGC-CACC-CGUaCCGGGAg--GGACC- -5'
28910 5' -61.2 NC_006146.1 + 118060 0.7 0.447075
Target:  5'- -gGGCGG-GGGCGgcggcggcucGGCCCUCcgcauCCUGGg -3'
miRNA:   3'- uaCUGCCaCCCGUa---------CCGGGAG-----GGACC- -5'
28910 5' -61.2 NC_006146.1 + 121504 0.66 0.675412
Target:  5'- cUGACGGUGGGCAUgacgcaggacaacGGCa-UCCCc-- -3'
miRNA:   3'- uACUGCCACCCGUA-------------CCGggAGGGacc -5'
28910 5' -61.2 NC_006146.1 + 123109 0.71 0.403544
Target:  5'- -cGGCGGUGGGCGcuagacggGGCUUUcagacggCCCUGGa -3'
miRNA:   3'- uaCUGCCACCCGUa-------CCGGGA-------GGGACC- -5'
28910 5' -61.2 NC_006146.1 + 126016 0.7 0.480236
Target:  5'- -gGGCGGUGGGCuucugcugcugGGCCgggagggacugggCUCCCUuGGg -3'
miRNA:   3'- uaCUGCCACCCGua---------CCGG-------------GAGGGA-CC- -5'
28910 5' -61.2 NC_006146.1 + 127383 0.69 0.539251
Target:  5'- cUGAUGGUGgccGGCAgccUGGCCCggaCCCUacuGGg -3'
miRNA:   3'- uACUGCCAC---CCGU---ACCGGGa--GGGA---CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.