miRNA display CGI


Results 1 - 20 of 107 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28910 5' -61.2 NC_006146.1 + 170383 0.67 0.637017
Target:  5'- uGUGugGa--GGCcgGGCCUcCCCUGGg -3'
miRNA:   3'- -UACugCcacCCGuaCCGGGaGGGACC- -5'
28910 5' -61.2 NC_006146.1 + 169670 0.7 0.464846
Target:  5'- cGUGGCGGgcgcGCGUGGCCCgccCCCgGGu -3'
miRNA:   3'- -UACUGCCacc-CGUACCGGGa--GGGaCC- -5'
28910 5' -61.2 NC_006146.1 + 169452 0.67 0.637017
Target:  5'- uGUGugGa--GGCcgGGCCUcCCCUGGg -3'
miRNA:   3'- -UACugCcacCCGuaCCGGGaGGGACC- -5'
28910 5' -61.2 NC_006146.1 + 168738 0.7 0.464846
Target:  5'- cGUGGCGGgcgcGCGUGGCCCgccCCCgGGu -3'
miRNA:   3'- -UACUGCCacc-CGUACCGGGa--GGGaCC- -5'
28910 5' -61.2 NC_006146.1 + 168520 0.67 0.637017
Target:  5'- uGUGugGa--GGCcgGGCCUcCCCUGGg -3'
miRNA:   3'- -UACugCcacCCGuaCCGGGaGGGACC- -5'
28910 5' -61.2 NC_006146.1 + 167996 0.71 0.396144
Target:  5'- --cAUGGUGGGCGUcaGGCCCUCuCCUc- -3'
miRNA:   3'- uacUGCCACCCGUA--CCGGGAG-GGAcc -5'
28910 5' -61.2 NC_006146.1 + 167806 0.7 0.464846
Target:  5'- cGUGGCGGgcgcGCGUGGCCCgccCCCgGGu -3'
miRNA:   3'- -UACUGCCacc-CGUACCGGGa--GGGaCC- -5'
28910 5' -61.2 NC_006146.1 + 167588 0.67 0.637017
Target:  5'- uGUGugGa--GGCcgGGCCUcCCCUGGg -3'
miRNA:   3'- -UACugCcacCCGuaCCGGGaGGGACC- -5'
28910 5' -61.2 NC_006146.1 + 167093 0.71 0.404371
Target:  5'- aGUGAgGG-GGGCGUGGCCaUCCCc-- -3'
miRNA:   3'- -UACUgCCaCCCGUACCGGgAGGGacc -5'
28910 5' -61.2 NC_006146.1 + 165208 0.7 0.438332
Target:  5'- gGUGAUGGUGGGUuuuugGGUCCUCgCUa- -3'
miRNA:   3'- -UACUGCCACCCGua---CCGGGAGgGAcc -5'
28910 5' -61.2 NC_006146.1 + 162625 0.66 0.666579
Target:  5'- -aGGCGGUGGGgGUaacGGCaCgCUCCCUc- -3'
miRNA:   3'- uaCUGCCACCCgUA---CCG-G-GAGGGAcc -5'
28910 5' -61.2 NC_006146.1 + 162046 0.66 0.715224
Target:  5'- -gGGCGG-GGGCA-GGCUgUUuaaCCUGGa -3'
miRNA:   3'- uaCUGCCaCCCGUaCCGGgAG---GGACC- -5'
28910 5' -61.2 NC_006146.1 + 161239 0.7 0.464846
Target:  5'- uAUGugGG-GGGCAguauaagGGCCCgUCCCa-- -3'
miRNA:   3'- -UACugCCaCCCGUa------CCGGG-AGGGacc -5'
28910 5' -61.2 NC_006146.1 + 147978 0.66 0.695907
Target:  5'- -gGAUGGUcGuGuGCAUGGCCCUCgUgGGg -3'
miRNA:   3'- uaCUGCCA-C-C-CGUACCGGGAGgGaCC- -5'
28910 5' -61.2 NC_006146.1 + 146679 0.69 0.510792
Target:  5'- -gGGCGGUGGGC--GGCCCcggCCCc-- -3'
miRNA:   3'- uaCUGCCACCCGuaCCGGGa--GGGacc -5'
28910 5' -61.2 NC_006146.1 + 142461 0.68 0.55852
Target:  5'- -aGGCGGUGuGGUggGGCUC-CCgUGGa -3'
miRNA:   3'- uaCUGCCAC-CCGuaCCGGGaGGgACC- -5'
28910 5' -61.2 NC_006146.1 + 139202 0.66 0.670508
Target:  5'- -gGGCGGU-GGCAgccgcGGUCCcccacccuucccuggUCCCUGGg -3'
miRNA:   3'- uaCUGCCAcCCGUa----CCGGG---------------AGGGACC- -5'
28910 5' -61.2 NC_006146.1 + 137993 0.67 0.607422
Target:  5'- -cGGCGGggugGGGgGUGcGCCCccagccggaCCCUGGu -3'
miRNA:   3'- uaCUGCCa---CCCgUAC-CGGGa--------GGGACC- -5'
28910 5' -61.2 NC_006146.1 + 137857 0.75 0.238239
Target:  5'- -gGugGGUGGGCGUgucccgGGCCCcgCCCcGGg -3'
miRNA:   3'- uaCugCCACCCGUA------CCGGGa-GGGaCC- -5'
28910 5' -61.2 NC_006146.1 + 137600 0.66 0.695907
Target:  5'- -gGGcCGG-GGGCcgGGUgC-CCCUGGg -3'
miRNA:   3'- uaCU-GCCaCCCGuaCCGgGaGGGACC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.