Results 41 - 60 of 107 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28910 | 5' | -61.2 | NC_006146.1 | + | 135650 | 0.66 | 0.695907 |
Target: 5'- -gGGcCGG-GGGCcgGGUgC-CCCUGGg -3' miRNA: 3'- uaCU-GCCaCCCGuaCCGgGaGGGACC- -5' |
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28910 | 5' | -61.2 | NC_006146.1 | + | 135557 | 0.66 | 0.695907 |
Target: 5'- -gGGcCGG-GGGCcgGGUgC-CCCUGGg -3' miRNA: 3'- uaCU-GCCaCCCGuaCCGgGaGGGACC- -5' |
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28910 | 5' | -61.2 | NC_006146.1 | + | 135464 | 0.66 | 0.695907 |
Target: 5'- -gGGcCGG-GGGCcgGGUgC-CCCUGGg -3' miRNA: 3'- uaCU-GCCaCCCGuaCCGgGaGGGACC- -5' |
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28910 | 5' | -61.2 | NC_006146.1 | + | 135371 | 0.66 | 0.695907 |
Target: 5'- -gGGcCGG-GGGCcgGGUgC-CCCUGGg -3' miRNA: 3'- uaCU-GCCaCCCGuaCCGgGaGGGACC- -5' |
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28910 | 5' | -61.2 | NC_006146.1 | + | 135278 | 0.66 | 0.695907 |
Target: 5'- -gGGcCGG-GGGCcgGGUgC-CCCUGGg -3' miRNA: 3'- uaCU-GCCaCCCGuaCCGgGaGGGACC- -5' |
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28910 | 5' | -61.2 | NC_006146.1 | + | 135185 | 0.66 | 0.695907 |
Target: 5'- -gGGcCGG-GGGCcgGGUgC-CCCUGGg -3' miRNA: 3'- uaCU-GCCaCCCGuaCCGgGaGGGACC- -5' |
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28910 | 5' | -61.2 | NC_006146.1 | + | 128612 | 0.66 | 0.715224 |
Target: 5'- cUGGCGcUGGGCuaccUGG-CCUCCCcGGu -3' miRNA: 3'- uACUGCcACCCGu---ACCgGGAGGGaCC- -5' |
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28910 | 5' | -61.2 | NC_006146.1 | + | 127383 | 0.69 | 0.539251 |
Target: 5'- cUGAUGGUGgccGGCAgccUGGCCCggaCCCUacuGGg -3' miRNA: 3'- uACUGCCAC---CCGU---ACCGGGa--GGGA---CC- -5' |
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28910 | 5' | -61.2 | NC_006146.1 | + | 126016 | 0.7 | 0.480236 |
Target: 5'- -gGGCGGUGGGCuucugcugcugGGCCgggagggacugggCUCCCUuGGg -3' miRNA: 3'- uaCUGCCACCCGua---------CCGG-------------GAGGGA-CC- -5' |
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28910 | 5' | -61.2 | NC_006146.1 | + | 123109 | 0.71 | 0.403544 |
Target: 5'- -cGGCGGUGGGCGcuagacggGGCUUUcagacggCCCUGGa -3' miRNA: 3'- uaCUGCCACCCGUa-------CCGGGA-------GGGACC- -5' |
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28910 | 5' | -61.2 | NC_006146.1 | + | 121504 | 0.66 | 0.675412 |
Target: 5'- cUGACGGUGGGCAUgacgcaggacaacGGCa-UCCCc-- -3' miRNA: 3'- uACUGCCACCCGUA-------------CCGggAGGGacc -5' |
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28910 | 5' | -61.2 | NC_006146.1 | + | 118060 | 0.7 | 0.447075 |
Target: 5'- -gGGCGG-GGGCGgcggcggcucGGCCCUCcgcauCCUGGg -3' miRNA: 3'- uaCUGCCaCCCGUa---------CCGGGAG-----GGACC- -5' |
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28910 | 5' | -61.2 | NC_006146.1 | + | 116997 | 0.66 | 0.705594 |
Target: 5'- --aGCGcGUGGaGCG-GGCCCUggaCCUGGg -3' miRNA: 3'- uacUGC-CACC-CGUaCCGGGAg--GGACC- -5' |
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28910 | 5' | -61.2 | NC_006146.1 | + | 113637 | 0.66 | 0.68617 |
Target: 5'- uUGACGGUgcuccgGGGgAUGGCCUUgcugaccacgggCCCgUGGa -3' miRNA: 3'- uACUGCCA------CCCgUACCGGGA------------GGG-ACC- -5' |
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28910 | 5' | -61.2 | NC_006146.1 | + | 92319 | 0.67 | 0.656741 |
Target: 5'- cUGcUGGgGGGCG-GGCCCggCCUGGg -3' miRNA: 3'- uACuGCCaCCCGUaCCGGGagGGACC- -5' |
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28910 | 5' | -61.2 | NC_006146.1 | + | 92289 | 0.67 | 0.656741 |
Target: 5'- cUGcUGGgGGGCG-GGCCCggCCUGGg -3' miRNA: 3'- uACuGCCaCCCGUaCCGGGagGGACC- -5' |
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28910 | 5' | -61.2 | NC_006146.1 | + | 92251 | 0.67 | 0.655756 |
Target: 5'- uGUGGCugcugcuGGgGGGCG-GGCCCggCCUGGg -3' miRNA: 3'- -UACUG-------CCaCCCGUaCCGGGagGGACC- -5' |
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28910 | 5' | -61.2 | NC_006146.1 | + | 92199 | 0.67 | 0.656741 |
Target: 5'- cUGcUGGgGGGCG-GGCCCggCCUGGg -3' miRNA: 3'- uACuGCCaCCCGUaCCGGGagGGACC- -5' |
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28910 | 5' | -61.2 | NC_006146.1 | + | 92169 | 0.67 | 0.656741 |
Target: 5'- cUGcUGGgGGGCG-GGCCCggCCUGGg -3' miRNA: 3'- uACuGCCaCCCGUaCCGGGagGGACC- -5' |
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28910 | 5' | -61.2 | NC_006146.1 | + | 92139 | 0.67 | 0.656741 |
Target: 5'- cUGcUGGgGGGCG-GGCCCggCCUGGg -3' miRNA: 3'- uACuGCCaCCCGUaCCGGGagGGACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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