Results 61 - 80 of 107 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28910 | 5' | -61.2 | NC_006146.1 | + | 92109 | 0.67 | 0.656741 |
Target: 5'- cUGcUGGgGGGCG-GGCCCggCCUGGg -3' miRNA: 3'- uACuGCCaCCCGUaCCGGGagGGACC- -5' |
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28910 | 5' | -61.2 | NC_006146.1 | + | 92050 | 0.67 | 0.656741 |
Target: 5'- cUGcUGGgGGGCG-GGCCCggCCUGGg -3' miRNA: 3'- uACuGCCaCCCGUaCCGGGagGGACC- -5' |
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28910 | 5' | -61.2 | NC_006146.1 | + | 92020 | 0.67 | 0.656741 |
Target: 5'- cUGcUGGgGGGCG-GGCCCggCCUGGg -3' miRNA: 3'- uACuGCCaCCCGUaCCGGGagGGACC- -5' |
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28910 | 5' | -61.2 | NC_006146.1 | + | 90549 | 0.66 | 0.695907 |
Target: 5'- --aGCGGUGGaGCAgGGCCCgggagaagaCCCgGGa -3' miRNA: 3'- uacUGCCACC-CGUaCCGGGa--------GGGaCC- -5' |
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28910 | 5' | -61.2 | NC_006146.1 | + | 85642 | 0.66 | 0.724788 |
Target: 5'- -aGACaG-GGGCugguUGGCCCacggggaCCCUGGu -3' miRNA: 3'- uaCUGcCaCCCGu---ACCGGGa------GGGACC- -5' |
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28910 | 5' | -61.2 | NC_006146.1 | + | 72298 | 0.66 | 0.723834 |
Target: 5'- -cGugGGUGGuCGUGGagagaauucuggcCCCUUUCUGGu -3' miRNA: 3'- uaCugCCACCcGUACC-------------GGGAGGGACC- -5' |
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28910 | 5' | -61.2 | NC_006146.1 | + | 71678 | 0.72 | 0.359719 |
Target: 5'- -aGACGGUG-GUcgGGCgcgccgaggccgcggCCUCCCUGGa -3' miRNA: 3'- uaCUGCCACcCGuaCCG---------------GGAGGGACC- -5' |
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28910 | 5' | -61.2 | NC_006146.1 | + | 69644 | 0.66 | 0.715224 |
Target: 5'- -gGGCGGcuaaUGGGCccgcGGUCCUCCuccagCUGGg -3' miRNA: 3'- uaCUGCC----ACCCGua--CCGGGAGG-----GACC- -5' |
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28910 | 5' | -61.2 | NC_006146.1 | + | 66672 | 0.75 | 0.243856 |
Target: 5'- cUGAgGG-GGGCggGGCaCCUCCCUGa -3' miRNA: 3'- uACUgCCaCCCGuaCCG-GGAGGGACc -5' |
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28910 | 5' | -61.2 | NC_006146.1 | + | 64249 | 0.71 | 0.396144 |
Target: 5'- -gGGCGGgagGGGCGUGGCUcgCUCCgaacaUGGg -3' miRNA: 3'- uaCUGCCa--CCCGUACCGG--GAGGg----ACC- -5' |
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28910 | 5' | -61.2 | NC_006146.1 | + | 63349 | 0.73 | 0.320031 |
Target: 5'- uGUGcCGGUaacuGGGCAcagGGCCCUCCUgGGg -3' miRNA: 3'- -UACuGCCA----CCCGUa--CCGGGAGGGaCC- -5' |
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28910 | 5' | -61.2 | NC_006146.1 | + | 57379 | 0.66 | 0.695907 |
Target: 5'- gGUGGCgccGGUGGGC-UGGCCCcgcgaccgugCCC-GGc -3' miRNA: 3'- -UACUG---CCACCCGuACCGGGa---------GGGaCC- -5' |
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28910 | 5' | -61.2 | NC_006146.1 | + | 56812 | 0.71 | 0.412706 |
Target: 5'- cUGGCGGgcgGGGCuucUGGCCC-CCgaGGc -3' miRNA: 3'- uACUGCCa--CCCGu--ACCGGGaGGgaCC- -5' |
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28910 | 5' | -61.2 | NC_006146.1 | + | 56628 | 0.67 | 0.656741 |
Target: 5'- uUGGCucuGUuuccuaucugGGGCAccacuacgagcUGGCCCUCCCUGa -3' miRNA: 3'- uACUGc--CA----------CCCGU-----------ACCGGGAGGGACc -5' |
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28910 | 5' | -61.2 | NC_006146.1 | + | 55812 | 0.66 | 0.715224 |
Target: 5'- -gGGCGGUGGaaGaGGCCgUCCCggccUGGg -3' miRNA: 3'- uaCUGCCACCcgUaCCGGgAGGG----ACC- -5' |
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28910 | 5' | -61.2 | NC_006146.1 | + | 54053 | 0.69 | 0.501443 |
Target: 5'- -cGGCGGUGGuCAgGGCCCa-CCUGGc -3' miRNA: 3'- uaCUGCCACCcGUaCCGGGagGGACC- -5' |
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28910 | 5' | -61.2 | NC_006146.1 | + | 52982 | 0.71 | 0.396144 |
Target: 5'- -gGGCGGggcGGGCGUcucgaGGCCCcucuucuggCCCUGGg -3' miRNA: 3'- uaCUGCCa--CCCGUA-----CCGGGa--------GGGACC- -5' |
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28910 | 5' | -61.2 | NC_006146.1 | + | 51844 | 0.68 | 0.548859 |
Target: 5'- -aGGgGGgcucgGGGCcUGGCCCgagCCCgGGg -3' miRNA: 3'- uaCUgCCa----CCCGuACCGGGa--GGGaCC- -5' |
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28910 | 5' | -61.2 | NC_006146.1 | + | 51231 | 0.67 | 0.607422 |
Target: 5'- gGUGGCgGGUGaGGUuggugAUGGCCCUugUCCUGa -3' miRNA: 3'- -UACUG-CCAC-CCG-----UACCGGGA--GGGACc -5' |
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28910 | 5' | -61.2 | NC_006146.1 | + | 49954 | 0.71 | 0.429688 |
Target: 5'- cGUGACGGUucuuggaguGGGCgAUGGUCCUCU-UGGa -3' miRNA: 3'- -UACUGCCA---------CCCG-UACCGGGAGGgACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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