miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28910 5' -61.2 NC_006146.1 + 44705 0.77 0.187858
Target:  5'- -cGGCGGUGGcCGUGGCCC-CCgCUGGc -3'
miRNA:   3'- uaCUGCCACCcGUACCGGGaGG-GACC- -5'
28910 5' -61.2 NC_006146.1 + 146679 0.69 0.510792
Target:  5'- -gGGCGGUGGGC--GGCCCcggCCCc-- -3'
miRNA:   3'- uaCUGCCACCCGuaCCGGGa--GGGacc -5'
28910 5' -61.2 NC_006146.1 + 51844 0.68 0.548859
Target:  5'- -aGGgGGgcucgGGGCcUGGCCCgagCCCgGGg -3'
miRNA:   3'- uaCUgCCa----CCCGuACCGGGa--GGGaCC- -5'
28910 5' -61.2 NC_006146.1 + 40143 0.66 0.724788
Target:  5'- -gGAgGG-GGGC-UGGCCauaCCUGGa -3'
miRNA:   3'- uaCUgCCaCCCGuACCGGgagGGACC- -5'
28910 5' -61.2 NC_006146.1 + 52982 0.71 0.396144
Target:  5'- -gGGCGGggcGGGCGUcucgaGGCCCcucuucuggCCCUGGg -3'
miRNA:   3'- uaCUGCCa--CCCGUA-----CCGGGa--------GGGACC- -5'
28910 5' -61.2 NC_006146.1 + 167093 0.71 0.404371
Target:  5'- aGUGAgGG-GGGCGUGGCCaUCCCc-- -3'
miRNA:   3'- -UACUgCCaCCCGUACCGGgAGGGacc -5'
28910 5' -61.2 NC_006146.1 + 56812 0.71 0.412706
Target:  5'- cUGGCGGgcgGGGCuucUGGCCC-CCgaGGc -3'
miRNA:   3'- uACUGCCa--CCCGu--ACCGGGaGGgaCC- -5'
28910 5' -61.2 NC_006146.1 + 165208 0.7 0.438332
Target:  5'- gGUGAUGGUGGGUuuuugGGUCCUCgCUa- -3'
miRNA:   3'- -UACUGCCACCCGua---CCGGGAGgGAcc -5'
28910 5' -61.2 NC_006146.1 + 169670 0.7 0.464846
Target:  5'- cGUGGCGGgcgcGCGUGGCCCgccCCCgGGu -3'
miRNA:   3'- -UACUGCCacc-CGUACCGGGa--GGGaCC- -5'
28910 5' -61.2 NC_006146.1 + 54053 0.69 0.501443
Target:  5'- -cGGCGGUGGuCAgGGCCCa-CCUGGc -3'
miRNA:   3'- uaCUGCCACCcGUaCCGGGagGGACC- -5'
28910 5' -61.2 NC_006146.1 + 126016 0.7 0.480236
Target:  5'- -gGGCGGUGGGCuucugcugcugGGCCgggagggacugggCUCCCUuGGg -3'
miRNA:   3'- uaCUGCCACCCGua---------CCGG-------------GAGGGA-CC- -5'
28910 5' -61.2 NC_006146.1 + 168738 0.7 0.464846
Target:  5'- cGUGGCGGgcgcGCGUGGCCCgccCCCgGGu -3'
miRNA:   3'- -UACUGCCacc-CGUACCGGGa--GGGaCC- -5'
28910 5' -61.2 NC_006146.1 + 137857 0.75 0.238239
Target:  5'- -gGugGGUGGGCGUgucccgGGCCCcgCCCcGGg -3'
miRNA:   3'- uaCugCCACCCGUA------CCGGGa-GGGaCC- -5'
28910 5' -61.2 NC_006146.1 + 33603 0.7 0.483893
Target:  5'- ----gGGUGGGCGUGGUCCgcggguucggugcaCCUGGa -3'
miRNA:   3'- uacugCCACCCGUACCGGGag------------GGACC- -5'
28910 5' -61.2 NC_006146.1 + 41304 0.75 0.243855
Target:  5'- -aGACGGcgGaGGCAUGGCgucCCUCCCUGu -3'
miRNA:   3'- uaCUGCCa-C-CCGUACCG---GGAGGGACc -5'
28910 5' -61.2 NC_006146.1 + 167806 0.7 0.464846
Target:  5'- cGUGGCGGgcgcGCGUGGCCCgccCCCgGGu -3'
miRNA:   3'- -UACUGCCacc-CGUACCGGGa--GGGaCC- -5'
28910 5' -61.2 NC_006146.1 + 33748 0.69 0.501443
Target:  5'- ---cCGGUGGGUGUGGUCCgcugggUCCgCUGGu -3'
miRNA:   3'- uacuGCCACCCGUACCGGG------AGG-GACC- -5'
28910 5' -61.2 NC_006146.1 + 127383 0.69 0.539251
Target:  5'- cUGAUGGUGgccGGCAgccUGGCCCggaCCCUacuGGg -3'
miRNA:   3'- uACUGCCAC---CCGU---ACCGGGa--GGGA---CC- -5'
28910 5' -61.2 NC_006146.1 + 45524 0.73 0.313051
Target:  5'- --cACGGUGGGgGccUGGgCCUCCUUGGg -3'
miRNA:   3'- uacUGCCACCCgU--ACCgGGAGGGACC- -5'
28910 5' -61.2 NC_006146.1 + 33967 0.71 0.412706
Target:  5'- ----gGGUGGGCGUGGUCCgcugggUCCgCUGGu -3'
miRNA:   3'- uacugCCACCCGUACCGGG------AGG-GACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.