miRNA display CGI


Results 41 - 60 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28910 5' -61.2 NC_006146.1 + 136207 0.66 0.695907
Target:  5'- -gGGcCGG-GGGCcgGGUgC-CCCUGGg -3'
miRNA:   3'- uaCU-GCCaCCCGuaCCGgGaGGGACC- -5'
28910 5' -61.2 NC_006146.1 + 135464 0.66 0.695907
Target:  5'- -gGGcCGG-GGGCcgGGUgC-CCCUGGg -3'
miRNA:   3'- uaCU-GCCaCCCGuaCCGgGaGGGACC- -5'
28910 5' -61.2 NC_006146.1 + 168520 0.67 0.637017
Target:  5'- uGUGugGa--GGCcgGGCCUcCCCUGGg -3'
miRNA:   3'- -UACugCcacCCGuaCCGGGaGGGACC- -5'
28910 5' -61.2 NC_006146.1 + 136114 0.66 0.695907
Target:  5'- -gGGcCGG-GGGCcgGGUgC-CCCUGGg -3'
miRNA:   3'- uaCU-GCCaCCCGuaCCGgGaGGGACC- -5'
28910 5' -61.2 NC_006146.1 + 167588 0.67 0.637017
Target:  5'- uGUGugGa--GGCcgGGCCUcCCCUGGg -3'
miRNA:   3'- -UACugCcacCCGuaCCGGGaGGGACC- -5'
28910 5' -61.2 NC_006146.1 + 137229 0.66 0.695907
Target:  5'- -gGGcCGG-GGGCcgGGUgC-CCCUGGg -3'
miRNA:   3'- uaCU-GCCaCCCGuaCCGgGaGGGACC- -5'
28910 5' -61.2 NC_006146.1 + 170383 0.67 0.637017
Target:  5'- uGUGugGa--GGCcgGGCCUcCCCUGGg -3'
miRNA:   3'- -UACugCcacCCGuaCCGGGaGGGACC- -5'
28910 5' -61.2 NC_006146.1 + 137136 0.66 0.695907
Target:  5'- -gGGcCGG-GGGCcgGGUgC-CCCUGGg -3'
miRNA:   3'- uaCU-GCCaCCCGuaCCGgGaGGGACC- -5'
28910 5' -61.2 NC_006146.1 + 137043 0.66 0.695907
Target:  5'- -gGGcCGG-GGGCcgGGUgC-CCCUGGg -3'
miRNA:   3'- uaCU-GCCaCCCGuaCCGgGaGGGACC- -5'
28910 5' -61.2 NC_006146.1 + 136764 0.66 0.695907
Target:  5'- -gGGcCGG-GGGCcgGGUgC-CCCUGGg -3'
miRNA:   3'- uaCU-GCCaCCCGuaCCGgGaGGGACC- -5'
28910 5' -61.2 NC_006146.1 + 136672 0.66 0.695907
Target:  5'- -gGGcCGG-GGGCcgGGUgC-CCCUGGg -3'
miRNA:   3'- uaCU-GCCaCCCGuaCCGgGaGGGACC- -5'
28910 5' -61.2 NC_006146.1 + 136486 0.66 0.695907
Target:  5'- -gGGcCGG-GGGCcgGGUgC-CCCUGGg -3'
miRNA:   3'- uaCU-GCCaCCCGuaCCGgGaGGGACC- -5'
28910 5' -61.2 NC_006146.1 + 136393 0.66 0.695907
Target:  5'- -gGGcCGG-GGGCcgGGUgC-CCCUGGg -3'
miRNA:   3'- uaCU-GCCaCCCGuaCCGgGaGGGACC- -5'
28910 5' -61.2 NC_006146.1 + 136021 0.66 0.695907
Target:  5'- -gGGcCGG-GGGCcgGGUgC-CCCUGGg -3'
miRNA:   3'- uaCU-GCCaCCCGuaCCGgGaGGGACC- -5'
28910 5' -61.2 NC_006146.1 + 135928 0.66 0.695907
Target:  5'- -gGGcCGG-GGGCcgGGUgC-CCCUGGg -3'
miRNA:   3'- uaCU-GCCaCCCGuaCCGgGaGGGACC- -5'
28910 5' -61.2 NC_006146.1 + 135742 0.66 0.695907
Target:  5'- -gGGcCGG-GGGCcgGGUgC-CCCUGGg -3'
miRNA:   3'- uaCU-GCCaCCCGuaCCGgGaGGGACC- -5'
28910 5' -61.2 NC_006146.1 + 135650 0.66 0.695907
Target:  5'- -gGGcCGG-GGGCcgGGUgC-CCCUGGg -3'
miRNA:   3'- uaCU-GCCaCCCGuaCCGgGaGGGACC- -5'
28910 5' -61.2 NC_006146.1 + 135278 0.66 0.695907
Target:  5'- -gGGcCGG-GGGCcgGGUgC-CCCUGGg -3'
miRNA:   3'- uaCU-GCCaCCCGuaCCGgGaGGGACC- -5'
28910 5' -61.2 NC_006146.1 + 57379 0.66 0.695907
Target:  5'- gGUGGCgccGGUGGGC-UGGCCCcgcgaccgugCCC-GGc -3'
miRNA:   3'- -UACUG---CCACCCGuACCGGGa---------GGGaCC- -5'
28910 5' -61.2 NC_006146.1 + 139202 0.66 0.670508
Target:  5'- -gGGCGGU-GGCAgccgcGGUCCcccacccuucccuggUCCCUGGg -3'
miRNA:   3'- uaCUGCCAcCCGUa----CCGGG---------------AGGGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.