miRNA display CGI


Results 61 - 80 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28910 5' -61.2 NC_006146.1 + 136393 0.66 0.695907
Target:  5'- -gGGcCGG-GGGCcgGGUgC-CCCUGGg -3'
miRNA:   3'- uaCU-GCCaCCCGuaCCGgGaGGGACC- -5'
28910 5' -61.2 NC_006146.1 + 136579 0.66 0.695907
Target:  5'- -gGGcCGG-GGGCcgGGUgC-CCCUGGg -3'
miRNA:   3'- uaCU-GCCaCCCGuaCCGgGaGGGACC- -5'
28910 5' -61.2 NC_006146.1 + 136672 0.66 0.695907
Target:  5'- -gGGcCGG-GGGCcgGGUgC-CCCUGGg -3'
miRNA:   3'- uaCU-GCCaCCCGuaCCGgGaGGGACC- -5'
28910 5' -61.2 NC_006146.1 + 136950 0.66 0.695907
Target:  5'- -gGGcCGG-GGGCcgGGUgC-CCCUGGg -3'
miRNA:   3'- uaCU-GCCaCCCGuaCCGgGaGGGACC- -5'
28910 5' -61.2 NC_006146.1 + 137043 0.66 0.695907
Target:  5'- -gGGcCGG-GGGCcgGGUgC-CCCUGGg -3'
miRNA:   3'- uaCU-GCCaCCCGuaCCGgGaGGGACC- -5'
28910 5' -61.2 NC_006146.1 + 137229 0.66 0.695907
Target:  5'- -gGGcCGG-GGGCcgGGUgC-CCCUGGg -3'
miRNA:   3'- uaCU-GCCaCCCGuaCCGgGaGGGACC- -5'
28910 5' -61.2 NC_006146.1 + 136207 0.66 0.695907
Target:  5'- -gGGcCGG-GGGCcgGGUgC-CCCUGGg -3'
miRNA:   3'- uaCU-GCCaCCCGuaCCGgGaGGGACC- -5'
28910 5' -61.2 NC_006146.1 + 44705 0.77 0.187858
Target:  5'- -cGGCGGUGGcCGUGGCCC-CCgCUGGc -3'
miRNA:   3'- uaCUGCCACCcGUACCGGGaGG-GACC- -5'
28910 5' -61.2 NC_006146.1 + 44395 0.7 0.473868
Target:  5'- cGUGugGGgccGGGCAcGGCgCCUUCCUcgaGGg -3'
miRNA:   3'- -UACugCCa--CCCGUaCCG-GGAGGGA---CC- -5'
28910 5' -61.2 NC_006146.1 + 162046 0.66 0.715224
Target:  5'- -gGGCGG-GGGCA-GGCUgUUuaaCCUGGa -3'
miRNA:   3'- uaCUGCCaCCCGUaCCGGgAG---GGACC- -5'
28910 5' -61.2 NC_006146.1 + 167996 0.71 0.396144
Target:  5'- --cAUGGUGGGCGUcaGGCCCUCuCCUc- -3'
miRNA:   3'- uacUGCCACCCGUA--CCGGGAG-GGAcc -5'
28910 5' -61.2 NC_006146.1 + 9454 0.69 0.501443
Target:  5'- uGUGucACGGUGGGCGcggGGUCCgcgCCCucUGGc -3'
miRNA:   3'- -UAC--UGCCACCCGUa--CCGGGa--GGG--ACC- -5'
28910 5' -61.2 NC_006146.1 + 161239 0.7 0.464846
Target:  5'- uAUGugGG-GGGCAguauaagGGCCCgUCCCa-- -3'
miRNA:   3'- -UACugCCaCCCGUa------CCGGG-AGGGacc -5'
28910 5' -61.2 NC_006146.1 + 118060 0.7 0.447075
Target:  5'- -gGGCGG-GGGCGgcggcggcucGGCCCUCcgcauCCUGGg -3'
miRNA:   3'- uaCUGCCaCCCGUa---------CCGGGAG-----GGACC- -5'
28910 5' -61.2 NC_006146.1 + 49954 0.71 0.429688
Target:  5'- cGUGACGGUucuuggaguGGGCgAUGGUCCUCU-UGGa -3'
miRNA:   3'- -UACUGCCA---------CCCG-UACCGGGAGGgACC- -5'
28910 5' -61.2 NC_006146.1 + 123109 0.71 0.403544
Target:  5'- -cGGCGGUGGGCGcuagacggGGCUUUcagacggCCCUGGa -3'
miRNA:   3'- uaCUGCCACCCGUa-------CCGGGA-------GGGACC- -5'
28910 5' -61.2 NC_006146.1 + 22728 0.7 0.471152
Target:  5'- -gGACGcacGUGGGCAUGGCCgUagagaagacccgggCCCUGa -3'
miRNA:   3'- uaCUGC---CACCCGUACCGGgA--------------GGGACc -5'
28910 5' -61.2 NC_006146.1 + 92169 0.67 0.656741
Target:  5'- cUGcUGGgGGGCG-GGCCCggCCUGGg -3'
miRNA:   3'- uACuGCCaCCCGUaCCGGGagGGACC- -5'
28910 5' -61.2 NC_006146.1 + 92199 0.67 0.656741
Target:  5'- cUGcUGGgGGGCG-GGCCCggCCUGGg -3'
miRNA:   3'- uACuGCCaCCCGUaCCGGGagGGACC- -5'
28910 5' -61.2 NC_006146.1 + 92289 0.67 0.656741
Target:  5'- cUGcUGGgGGGCG-GGCCCggCCUGGg -3'
miRNA:   3'- uACuGCCaCCCGUaCCGGGagGGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.