miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28911 5' -54.3 NC_006146.1 + 20197 0.66 0.962587
Target:  5'- -cCCgGGgGCGCAGGAGGcugGGCAUguacugcguGCAGg -3'
miRNA:   3'- caGG-CCgUGCGUCCUCU---UUGUG---------UGUC- -5'
28911 5' -54.3 NC_006146.1 + 106853 0.66 0.962587
Target:  5'- -cCUGGCugGCuuucuGGGGGGACAgUACAa -3'
miRNA:   3'- caGGCCGugCGu----CCUCUUUGU-GUGUc -5'
28911 5' -54.3 NC_006146.1 + 170666 0.66 0.962587
Target:  5'- -aUCGGCGCGgGGGAGGccaggGGCGCccCGGg -3'
miRNA:   3'- caGGCCGUGCgUCCUCU-----UUGUGu-GUC- -5'
28911 5' -54.3 NC_006146.1 + 6386 0.66 0.959025
Target:  5'- -aCCGGgGCGguGGA-AAGC-CACGGg -3'
miRNA:   3'- caGGCCgUGCguCCUcUUUGuGUGUC- -5'
28911 5' -54.3 NC_006146.1 + 166681 0.66 0.959025
Target:  5'- gGUgUGGcCugGCAGGGGGGAgACGgGGc -3'
miRNA:   3'- -CAgGCC-GugCGUCCUCUUUgUGUgUC- -5'
28911 5' -54.3 NC_006146.1 + 115200 0.66 0.959025
Target:  5'- cGUCUGGCG-GUAGGAGGAGuugUACAUg- -3'
miRNA:   3'- -CAGGCCGUgCGUCCUCUUU---GUGUGuc -5'
28911 5' -54.3 NC_006146.1 + 73494 0.66 0.959025
Target:  5'- uUCCaGCACcagGCGcGGGGucACGCGCAGg -3'
miRNA:   3'- cAGGcCGUG---CGU-CCUCuuUGUGUGUC- -5'
28911 5' -54.3 NC_006146.1 + 155563 0.66 0.955236
Target:  5'- -gCCGGgcuCGCGCGGGgcgcccgccAGggGCACAcCGGg -3'
miRNA:   3'- caGGCC---GUGCGUCC---------UCuuUGUGU-GUC- -5'
28911 5' -54.3 NC_006146.1 + 128545 0.66 0.955236
Target:  5'- -cCUGGCgGCGCGGGAGAuccuggagcGGCAguuCGCGGc -3'
miRNA:   3'- caGGCCG-UGCGUCCUCU---------UUGU---GUGUC- -5'
28911 5' -54.3 NC_006146.1 + 149634 0.66 0.955236
Target:  5'- cGUCCGccaGCAC-CAGGucGAGCACGCGc -3'
miRNA:   3'- -CAGGC---CGUGcGUCCucUUUGUGUGUc -5'
28911 5' -54.3 NC_006146.1 + 119247 0.66 0.951217
Target:  5'- -cCCGGCACcgGCccuggcccccuGGGAGuccagagccugGAGCACACGGa -3'
miRNA:   3'- caGGCCGUG--CG-----------UCCUC-----------UUUGUGUGUC- -5'
28911 5' -54.3 NC_006146.1 + 87397 0.66 0.946963
Target:  5'- -cCCuGCGC-CAGGAGAGGCACcACGc -3'
miRNA:   3'- caGGcCGUGcGUCCUCUUUGUG-UGUc -5'
28911 5' -54.3 NC_006146.1 + 86299 0.66 0.946524
Target:  5'- uGUCCGGCAUggcuggaGUAGGAGGccCugGgCAGg -3'
miRNA:   3'- -CAGGCCGUG-------CGUCCUCUuuGugU-GUC- -5'
28911 5' -54.3 NC_006146.1 + 141683 0.67 0.944296
Target:  5'- cUCCGGCcggccugauggaccCGguGGGGAGACAgCugAGg -3'
miRNA:   3'- cAGGCCGu-------------GCguCCUCUUUGU-GugUC- -5'
28911 5' -54.3 NC_006146.1 + 114955 0.67 0.942471
Target:  5'- --gCGGCGaugGCGGGGG--GCACGCAGc -3'
miRNA:   3'- cagGCCGUg--CGUCCUCuuUGUGUGUC- -5'
28911 5' -54.3 NC_006146.1 + 50907 0.67 0.937739
Target:  5'- aUCCGGC-CGUuGGAG-AACACAUc- -3'
miRNA:   3'- cAGGCCGuGCGuCCUCuUUGUGUGuc -5'
28911 5' -54.3 NC_006146.1 + 59040 0.67 0.927014
Target:  5'- -gCUGGCggugaggGCGCAGcGGGccGACACGCAGg -3'
miRNA:   3'- caGGCCG-------UGCGUC-CUCu-UUGUGUGUC- -5'
28911 5' -54.3 NC_006146.1 + 48015 0.67 0.922089
Target:  5'- ---aGGcUugGCGGGGGAGGCACgGCGGg -3'
miRNA:   3'- caggCC-GugCGUCCUCUUUGUG-UGUC- -5'
28911 5' -54.3 NC_006146.1 + 44125 0.67 0.92153
Target:  5'- -cCCGGCGaGgAGGGGggGCaggacguGCGCAGa -3'
miRNA:   3'- caGGCCGUgCgUCCUCuuUG-------UGUGUC- -5'
28911 5' -54.3 NC_006146.1 + 10291 0.68 0.912848
Target:  5'- -gCUGGCAUGCcaggcggccgaccucGGGGGcAAGCACGCAc -3'
miRNA:   3'- caGGCCGUGCG---------------UCCUC-UUUGUGUGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.