miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28911 5' -54.3 NC_006146.1 + 3802 0.69 0.862262
Target:  5'- ---gGGCACGCGGGGGAuggcCACGCc- -3'
miRNA:   3'- caggCCGUGCGUCCUCUuu--GUGUGuc -5'
28911 5' -54.3 NC_006146.1 + 6386 0.66 0.959025
Target:  5'- -aCCGGgGCGguGGA-AAGC-CACGGg -3'
miRNA:   3'- caGGCCgUGCguCCUcUUUGuGUGUC- -5'
28911 5' -54.3 NC_006146.1 + 10291 0.68 0.912848
Target:  5'- -gCUGGCAUGCcaggcggccgaccucGGGGGcAAGCACGCAc -3'
miRNA:   3'- caGGCCGUGCG---------------UCCUC-UUUGUGUGUc -5'
28911 5' -54.3 NC_006146.1 + 14315 0.69 0.854493
Target:  5'- -gCUGGCGCaccuGCuGGAGAAcuCACGCAGg -3'
miRNA:   3'- caGGCCGUG----CGuCCUCUUu-GUGUGUC- -5'
28911 5' -54.3 NC_006146.1 + 14813 0.69 0.862262
Target:  5'- -gCCGGcCGgGCcGGAGGAGgGCACGGu -3'
miRNA:   3'- caGGCC-GUgCGuCCUCUUUgUGUGUC- -5'
28911 5' -54.3 NC_006146.1 + 16362 1.09 0.004114
Target:  5'- cGUCCGGCACGCAGGAGAAACACACAGa -3'
miRNA:   3'- -CAGGCCGUGCGUCCUCUUUGUGUGUC- -5'
28911 5' -54.3 NC_006146.1 + 20197 0.66 0.962587
Target:  5'- -cCCgGGgGCGCAGGAGGcugGGCAUguacugcguGCAGg -3'
miRNA:   3'- caGG-CCgUGCGUCCUCU---UUGUG---------UGUC- -5'
28911 5' -54.3 NC_006146.1 + 33994 0.69 0.869821
Target:  5'- gGUCCGGUGCaccuggaagGCAGGGGGggggucggGGCAgGCGGg -3'
miRNA:   3'- -CAGGCCGUG---------CGUCCUCU--------UUGUgUGUC- -5'
28911 5' -54.3 NC_006146.1 + 43532 0.69 0.869821
Target:  5'- cUCCacgaggGGCGCGCgcaagaagcaguAGGAGAcgcGGCACGCGGu -3'
miRNA:   3'- cAGG------CCGUGCG------------UCCUCU---UUGUGUGUC- -5'
28911 5' -54.3 NC_006146.1 + 44125 0.67 0.92153
Target:  5'- -cCCGGCGaGgAGGGGggGCaggacguGCGCAGa -3'
miRNA:   3'- caGGCCGUgCgUCCUCuuUG-------UGUGUC- -5'
28911 5' -54.3 NC_006146.1 + 48015 0.67 0.922089
Target:  5'- ---aGGcUugGCGGGGGAGGCACgGCGGg -3'
miRNA:   3'- caggCC-GugCGUCCUCUUUGUG-UGUC- -5'
28911 5' -54.3 NC_006146.1 + 48226 0.68 0.91044
Target:  5'- -cCUGGCGCGCcuGGGuGAGcgcCGCGCGGa -3'
miRNA:   3'- caGGCCGUGCG--UCCuCUUu--GUGUGUC- -5'
28911 5' -54.3 NC_006146.1 + 50030 0.74 0.574291
Target:  5'- -gCCGGggucgagGCGCAGGAGGGAgGCGCAGu -3'
miRNA:   3'- caGGCCg------UGCGUCCUCUUUgUGUGUC- -5'
28911 5' -54.3 NC_006146.1 + 50907 0.67 0.937739
Target:  5'- aUCCGGC-CGUuGGAG-AACACAUc- -3'
miRNA:   3'- cAGGCCGuGCGuCCUCuUUGUGUGuc -5'
28911 5' -54.3 NC_006146.1 + 51982 0.72 0.737679
Target:  5'- cUCCGGCAUGCGGGccGGGCGCGuuuCGGa -3'
miRNA:   3'- cAGGCCGUGCGUCCucUUUGUGU---GUC- -5'
28911 5' -54.3 NC_006146.1 + 53945 0.69 0.838346
Target:  5'- gGUCCGG-ACGCAGGGGcu---CACGGg -3'
miRNA:   3'- -CAGGCCgUGCGUCCUCuuuguGUGUC- -5'
28911 5' -54.3 NC_006146.1 + 59040 0.67 0.927014
Target:  5'- -gCUGGCggugaggGCGCAGcGGGccGACACGCAGg -3'
miRNA:   3'- caGGCCG-------UGCGUC-CUCu-UUGUGUGUC- -5'
28911 5' -54.3 NC_006146.1 + 59317 0.69 0.862262
Target:  5'- -cCUGGCugGCc-GAGAGGCugGCGGu -3'
miRNA:   3'- caGGCCGugCGucCUCUUUGugUGUC- -5'
28911 5' -54.3 NC_006146.1 + 65898 0.69 0.869821
Target:  5'- -gUgGGCACGCugauGGAGAAAUGgGCGGu -3'
miRNA:   3'- caGgCCGUGCGu---CCUCUUUGUgUGUC- -5'
28911 5' -54.3 NC_006146.1 + 68230 0.87 0.122091
Target:  5'- cGUCCGGCACaGCGGGGGAGGCGCggcugACAGa -3'
miRNA:   3'- -CAGGCCGUG-CGUCCUCUUUGUG-----UGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.